Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq540 174 3e-38 seq322 167 4e-36 seq982 163 5e-35 seq391 87.8 3e-12 >seq540 Length=89862 Score = 174 bits (192), Expect = 3e-38 Identities = 183/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| |||| |||||||| ||| | || | || || || || Sbjct 83867 AATTTGCATACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTT 83808 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | || | | ||| || |||||||| |||||||| |||| ||| ||||| Sbjct 83807 ATAATCAGAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTG 83748 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||||||||| |||||||| || | |||| ||| || || || Sbjct 83747 GTCGGGTGGGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGA 83688 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||||||||| || |||||||| || |||| || |||||||| ||||||||||| Sbjct 83687 ACCTTCAACTTCTAATGTGATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCATTTT 83628 Query 193364 A 193364 | Sbjct 83627 A 83627 Score = 158 bits (174), Expect = 2e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| |||||||||| |||| ||| || ||||| | || | ||||| || || | Sbjct 84549 TTTAATTACCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGT 84490 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || || | || | | ||| || |||||||| ||||||||||| | ||| ||||||| Sbjct 84489 AATCAGAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGAT 84430 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || || |||||||||||||| |||||||| || | |||| ||| || || ||| Sbjct 84429 CGGGTGGGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAAC 84370 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||| || || |||||||| || | ||||| ||||| |||||||| Sbjct 84369 CTTCAACTTCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | || || || | ||| | || | ||||| || ||| Sbjct 84094 ATTTGCATACCACCTCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTA 84035 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | | ||| || |||||||| ||||||||||| | ||| |||||| Sbjct 84034 TAATCAGAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGA 83975 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||||||||| || ||||| || | ||| ||| || || || Sbjct 83974 TCGGGTGGGATACCTTCTTTATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGAG 83915 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| || || |||||||| || | ||||| ||||| |||||||| Sbjct 83914 CCCTCAACTTCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || || || | ||| | || | || || || || Sbjct 84323 AATTTGCATACCACCTCTGAGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTT 84264 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | || | ||| || |||||||| |||||||| || | ||| ||||| Sbjct 84263 ATAATCAGAGAGGGTACGGCCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTG 84204 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||||||||| |||||||| || | |||| ||| || || || Sbjct 84203 GTCGGGTGGGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGA 84144 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||||| || ||||||||||| || | || || ||||| |||||||| Sbjct 84143 ACCTTCAACTTCTAATGTGATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 >seq322 Length=112280 Score = 167 bits (184), Expect = 4e-36 Identities = 192/256 (75%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| ||||| || || ||||| | ||| | |||| ||||| || || Sbjct 11241 AATTTGCATACCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTT 11182 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | | ||| ||||||||||| || |||||||| | ||| ||||| Sbjct 11181 GTAGTCAGAGAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTG 11122 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| ||||| |||||||| || | |||| ||| ||||| || Sbjct 11121 GTCGGGTGGGATACCTTCTTTGTCTTGGATTTTGGTCTTGACATTTTCAATGGTATCAGA 11062 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||||||||| || ||||||||||| || | || |||||||| ||||||||| | Sbjct 11061 ACCTTCAACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATTAT 11002 Query 193364 ATTAGTAAAATAATTA 193379 || ||||| ||||| Sbjct 11001 -GTATTAAAA-AATTA 10988 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| |||| |||||||| ||| | ||| | ||||| || || Sbjct 11925 AATTTGCATACCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTT 11866 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | | ||| ||||||||||| || |||||||| | ||| ||||| Sbjct 11865 GTAGTCAGAGAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTG 11806 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || |||||||| ||||| |||||||| || | ||| ||| ||||| || Sbjct 11805 ATCGGGTGGGATACCTTCTTTGTCTTGGATTTTGGTCTTGACGTTTTCAATGGTATCAGA 11746 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| | || || |||||||| || | || |||||||| |||||||| Sbjct 11745 ACCTTCTACTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | || || || | ||| | |||| ||||| || || Sbjct 11696 ATTTGCATACCACCTCTAAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTG 11637 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | | || ||||||||||| || |||||||| | ||| ||||| Sbjct 11636 TAGTCAGAGAGGGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGG 11577 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || ||||| |||| ||| ||| ||||| ||| Sbjct 11576 TCGGGTGGGATACCTTCTTTGTCTTGGATCTTGGTCTTTACATTCTCAATGGTATCAGAA 11517 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||| || ||||||||||| || | || |||||||| |||||||| Sbjct 11516 CCTTCAACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || || | ||| | || | ||||| || || Sbjct 11468 ATTTGCATACCACCACGGAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTG 11409 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||||||| || | | ||| || |||||||| || |||||||| | ||| |||||| Sbjct 11408 TAGTCGGATAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGA 11349 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| ||||||||||| | ||| || || || ||| Sbjct 11348 TCGGGTGGGATACCTTCTTTGTCTTGGATTTTGGTTTTAACGTTTTCGATGGTGTCAGAA 11289 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||| || ||||||||||| || | || || ||||| |||||||| Sbjct 11288 CCTTCAACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| | |||||||| | || || || | ||| | || | ||||| || || Sbjct 12152 ATTTAATTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTG 12093 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | | ||| || ||||| || || |||||||| | ||| |||||| Sbjct 12092 TAGTCAGAGAGGGTACGACCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGA 12033 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || ||||| || | |||| ||| || || || Sbjct 12032 TCGGGTGGGATACCTTCCTTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAG 11973 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||| || ||||||||||| || | || || ||||| |||||||| Sbjct 11972 CCTTCAACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 >seq982 Length=41121 Score = 163 bits (180), Expect = 5e-35 Identities = 202/274 (74%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || || || | ||| | || | ||||| || || Sbjct 2586 AATTTGCATACCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTT 2645 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||||||| || | | ||| ||||||||||| ||||| ||||| | ||| ||||| Sbjct 2646 GTAGTCGGATAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTG 2705 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || |||||||| ||||| || ||||| || | |||| ||| || || || Sbjct 2706 ATCAGGTGGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGA 2765 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||||||| | || || |||||||| || | || |||||||| |||||||| || Sbjct 2766 ACCTTCAACTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGTT 2825 Query 193364 ATTAGTAAAATAATTATTTTAAATAATATATACT 193397 | | |||| || | |||||| | || ||||| Sbjct 2826 -TAATTAAACTAGAAAATTTAAACATTA-ATACT 2857 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || |||||||| ||| | || | || || ||| || Sbjct 2359 ATTTGCATACCACCACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTG 2418 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||||||| || | | ||| || |||||||| || || ||||| | ||| |||||| Sbjct 2419 TAGTCGGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGA 2478 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || ||||| || | |||| ||| || || ||| Sbjct 2479 TCGGGTGGGATACCTTCTTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAA 2538 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | || ||||||||||| || | || || ||||| |||||||| Sbjct 2539 CCTTCAACTTCCAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Score = 143 bits (158), Expect = 5e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| |||| |||||||| ||| | || | || || || || Sbjct 2130 AATTTGCATACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTT 2189 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||||||| || | | ||| || |||||||| |||||||| || | ||| ||||| Sbjct 2190 GTAGTCGGATAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTG 2249 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| ||||| || ||||| || | ||| || || || || Sbjct 2250 GTCGGGTGGGATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCGATGGTGTCAGA 2309 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| | || || |||||||| || | || |||||||| |||||||| Sbjct 2310 ACCTTCGACTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 Score = 113 bits (124), Expect = 8e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| | |||||||| | || || || | ||| | |||| ||||| || || | Sbjct 1904 TTTAGTTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGT 1963 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || || | || | | ||| || |||||||| || || ||||| | ||| ||||||| Sbjct 1964 AATCAGAGAGGGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGAT 2023 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || || |||||||| ||||| || ||||| || | ||| ||| || || ||| Sbjct 2024 CGGGTGGGATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAAC 2083 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||| || ||||||||||| || | || || ||||| |||||||| Sbjct 2084 CTTCTACCTCTAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 >seq391 Length=66319 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||||||||| || ||||| || | ||| |||||||| || || || |||||||| Sbjct 37281 ATCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTT 37340 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||| | || | ||| || || || || ||| ||||| ||||| || Sbjct 37341 GTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATCCCTCTACTTCGAGAGTAAT 37400 Query 193325 AGTTTTACCTGTT 193337 || |||||| || Sbjct 37401 CGTCTTACCTATT 37413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899566976083680