Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq3888 150 6e-32 seq385 93.3 1e-14 >seq3888 Length=2482 Score = 150 bits (166), Expect = 6e-32 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 1268 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 1327 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || | | |||||||||||||||||||||||| | || ||||| |||||||| || Sbjct 1328 CAGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCC 1387 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 ||| | || || || || ||||| || |||||||| || ||||| |||| || Sbjct 1388 GGCACCCGATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAA 1447 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739 |||| |||| |||||||| ||||| ||||||||||| || || || | |||| Sbjct 1448 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 1505 Score = 118 bits (130), Expect = 3e-22 Identities = 228/333 (68%), Gaps = 14/333 (4%) Strand=Plus/Plus Query 39351 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39410 ||||||||| || || |||||||| | |||||||||||| || |||| | | || Sbjct 132 GCCGCCATGAACGGCGCCGGGTAGTGAGCCTTCAGCCACGCAGTCTGGTAAGACACCAGG 191 Query 39411 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39470 || || || || ||||| | ||||||||| |||| || |||||| ||| || ||| Sbjct 192 CCATAGGCGGCAGAGTGGGATTTGTTGAAGCCGTAACCGGCGAACTTTTCCACCAGGTCG 251 Query 39471 CACA------CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG- 39523 | | | ||| || ||| ||| || | | | | |||| ||||| Sbjct 252 AAGATGTTACCGGCCAGGTCGGC---GTCGATGTTG--TTGGTGGCGCAA--CCTTCAAT 304 Query 39524 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39583 |||| || || |||||||| |||||||||| ||||| ||||| || || || || Sbjct 305 GAAGCCACCGCGCTGCTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCTCGACGCAG 364 Query 39584 CAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTC 39643 || ||| || |||||||| || |||||||||||||| |||| || | |||||| || Sbjct 365 CATGTCCGCGCCGCCGAGGGTATAGCCGGCCATGACCTGGGCAATCTGCATCACCTGTTC 424 Query 39644 CTGGTAGATGATGAGCTGGAAGGTCGGGTCCAG 39676 || || | ||||| | ||||||| |||| Sbjct 425 TTGATACAGGATGATGCCGTAGGTCGGTGCCAG 457 >seq385 Length=624889 Score = 93.3 bits (102), Expect = 1e-14 Identities = 189/279 (68%), Gaps = 24/279 (9%) Strand=Plus/Plus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 ||||||| ||||| || ||||| ||||| ||||| | || || || || |||| ||| Sbjct 406387 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 406446 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39678 ||||||| | || | |||||| |||||||||||||||| | || || Sbjct 406447 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGA------------CGCCCTGGG 406494 Query 39679 TCTCC--GACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTT 39736 | ||| ||| | || | | | | || ||| ||||||| || ||| ||| | || || Sbjct 406495 TTTCCTTGAC-GAGA-TGGTCGATCTTGGGATGGATCGACGCCATCTCCTCGTCGCCATT 406552 Query 39737 CTTACGGAGGGCGTAGTTCGTG-TGAGACCCCACGCCCATCGGACCCGGACGGTACAGCG 39795 ||| || | |||| ||| | || |||||||||||||||||||||||| Sbjct 406553 CTTGCGCGCGTTGTAGGTCGGGATG-------TTTTCCATCGGACCCGGACGGTACAGCG 406605 Query 39796 CGACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCA 39834 | || | || ||||||||||| ||| ||||||| Sbjct 406606 CCACAAGCGCGATGATGTCCTCGATCCGGTCGGGCTTCA 406644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163869670769832