Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq3888 150 6e-32 seq385 136 1e-27 >seq3888 Length=2482 Score = 150 bits (166), Expect = 6e-32 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 1268 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 1327 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || | | |||||||||||||||||||||||| | || ||||| |||||||| || Sbjct 1328 CAGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCC 1387 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | || || || || ||||| || || ||||| || ||||| |||| || Sbjct 1388 GGCACCCGATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAA 1447 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487 |||| |||| |||||||| ||||||||||||||||| || || || | |||| Sbjct 1448 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 1505 Score = 102 bits (112), Expect = 3e-17 Identities = 212/312 (68%), Gaps = 14/312 (4%) Strand=Plus/Plus Query 39099 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGT 39158 ||||||||| || ||||||||||| | ||||| |||||| || |||| | | || Sbjct 132 GCCGCCATGAACGGCGCCGGGTAGTGAGCCTTCAGCCACGCAGTCTGGTAAGACACCAGG 191 Query 39159 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCC 39218 || || || || ||||| | ||||||||| |||| || ||||| ||| || ||| Sbjct 192 CCATAGGCGGCAGAGTGGGATTTGTTGAAGCCGTAACCGGCGAACTTTTCCACCAGGTCG 251 Query 39219 CACA------CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG- 39271 | | | ||| || ||| ||| || | | | | |||| ||||| Sbjct 252 AAGATGTTACCGGCCAGGTCGGC---GTCGATGTTG--TTGGTGGCGCAA--CCTTCAAT 304 Query 39272 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39331 |||| || || |||||||| |||||||||| ||||| ||||| || || || || Sbjct 305 GAAGCCACCGCGCTGCTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCTCGACGCAG 364 Query 39332 CAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTC 39391 || ||| || || ||||| || |||||||||||||| |||| || | |||||| || Sbjct 365 CATGTCCGCGCCGCCGAGGGTATAGCCGGCCATGACCTGGGCAATCTGCATCACCTGTTC 424 Query 39392 CTGGTAGATGAT 39403 || || | ||| Sbjct 425 TTGATACAGGAT 436 >seq385 Length=624889 Score = 136 bits (150), Expect = 1e-27 Identities = 262/381 (69%), Gaps = 4/381 (1%) Strand=Plus/Plus Query 40111 AGGGCTTGTCGAGCACGCGAGCCG-CGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCG 40169 ||||| | ||||||||||| |||| |||| || | || |||||||| | | |||| Sbjct 407146 AGGGCATTTCGAGCACGCG-GCCGACGTCGCGCAGCACGGCGCGCGCCTGCAGCGTTCCG 407204 Query 40170 TACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATGAC 40228 | || ||||||||| |||| ||| || ||||| | || || || ||||||| Sbjct 407205 AAGGTGATGATCTGCGCCACCTGATCGCGGCCATACTT-GGCCTGAACATAGCGGATGAC 407263 Query 40229 CTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGG 40288 |||| | || ||| | | |||||| ||||| | |||||||| || ||||| ||||| Sbjct 407264 CTCGTCGCGCCGCTCCTGACAGAAGTCAATGTCAAAGTCGGGCATCGAGACGCGGTCGGG 407323 Query 40289 GTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAG 40348 || |||||||| ||||| | || | |||||| |||| |||||||||| || Sbjct 407324 ATTGAGGAAGCGTTCGAACAGCAGGGAGAAGCGCAGCGGATCGACGTCGGTGATCGTCAG 407383 Query 40349 GACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTT 40408 | ||||| || |||||||| || | ||||| || || || ||||| | | | Sbjct 407384 CGCATAGGCAACGAGCGAACCCGCACCGGAGCCACGACCGGGACCGACAGGAATATCATG 407443 Query 40409 CTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTG 40468 | |||||||| ||| ||||| | |||| ||||||||| ||| | |||| | Sbjct 407444 GGCTTTCGCCCATTTGATAAAGTCGGAAACGATGAGGAAGTAACCCGGATATTTCATCCG 407503 Query 40469 GATGATCATGTCGATCTCGTA 40489 | |||| ||| ||||| || Sbjct 407504 GGTGATGATGGAAATCTCATA 407524 Score = 87.8 bits (96), Expect = 6e-13 Identities = 188/279 (67%), Gaps = 24/279 (9%) Strand=Plus/Plus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 ||||||| ||||| || ||||| ||||| ||||| | ||||| || || |||| ||| Sbjct 406387 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 406446 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGA 39426 |||| || | || | |||||| |||||||||||||| | | || || Sbjct 406447 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGA------------CGCCCTGGG 406494 Query 39427 TCTCC--GACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTT 39484 | ||| ||| | || | | | | || ||| ||||||| || ||| ||| | || || Sbjct 406495 TTTCCTTGAC-GAGA-TGGTCGATCTTGGGATGGATCGACGCCATCTCCTCGTCGCCATT 406552 Query 39485 CTTCCGGAGGGCGTAGTTCGTG-TGAGACCCCACGCCCATCGGACCCGGACGGTACAGCG 39543 ||| || | |||| ||| | || |||||||||||||||||||||||| Sbjct 406553 CTTGCGCGCGTTGTAGGTCGGGATG-------TTTTCCATCGGACCCGGACGGTACAGCG 406605 Query 39544 CGACGACGGCTGAGATGTCCTCGAAGTTGTCCGGCTTCA 39582 | || | || ||||||||||| ||| ||||||| Sbjct 406606 CCACAAGCGCGATGATGTCCTCGATCCGGTCGGGCTTCA 406644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163309722466932