Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq1445 129 1e-25 >seq1445 Length=14432 Score = 129 bits (142), Expect = 1e-25 Identities = 241/342 (70%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 10369 CCTTCGAGGGGTTCGTTATCGAGCGCGTGAAGGCAG-GCCCATGCGAGGTCAGCGTGGCC 10427 ||||| ||||||||||| | |||||||| | ||| ||||| || ||||| || ||||| Sbjct 12851 CCTTCAAGGGGTTCGTTGTGCAGCGCGTGGAA-CAGCGCCCACGCTAGGTCGGCATGGCC 12909 Query 10428 GATTTCTTCGTTACGCGCGGCGGTGTAGGTCATCTTCGTGCCGCTCGGCG-TCATGGCTC 10486 | || || | || |||| ||||| || | | | | ||| |||| | || | | Sbjct 12910 CGTCTCGTCTGTGCGACCGGCCGTGTAAGTGAACAT-GCGCCCGGAGGCGGTGATTGTTT 12968 Query 10487 GGCGGATGGACAGGAACGATTGCGCGAGGTCGGTCATACCTGCGTCGAATTCCAGGC-GC 10545 |||||| | || || || ||||| | || ||| || || ||||| ||||| | || Sbjct 12969 TGCGGATAGCCATCAATGACTGCGCCATATCCGTCCAGCCCGCATCGAACTCCAGCCTGC 13028 Query 10546 --TTTTTCCCGATCACCGACAT--GCCTTTCAGGACAAGGCGGTTTTTCACTTCGGGCGA 10601 ||||| ||| || | | | ||||| ||| || |||||| |||| |||||||| || Sbjct 13029 CGTTTTT---GATGAC-GTCGTAAGCCTT-CAGCACCAGGCGGGTTTTGACTTCGGGTGA 13083 Query 10602 GTAATTGATCGGTACGACGCGCGGGAAGAACTGGCGCACAAGCTGATGCACGCCGTGACC 10661 ||| ||| || || | |||||||||||| ||| ||||| ||||||| ||| Sbjct 13084 GTAGCTGAACGTGGTGATGTTCGGGAAGAACTGCTTCACCAGCTGCGCCACGCCGGAACC 13143 Query 10662 GATGCCGGTCGTATCGATCGCGATATAGGTCACGTGGTAGCG 10703 ||||||| |||||||| |||| |||||||| |||||| Sbjct 13144 CGTGCCGGTGATATCGATCCCGATGTAGGTCACCCAGTAGCG 13185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113243944778496