Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq1617 109 2e-19 seq3178 107 6e-19 seq3563 86.0 2e-12 >seq1617 Length=5386 Score = 109 bits (120), Expect = 2e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 33163 ATTATGGCATCTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCG 33222 || |||||| ||| || || ||||| || || | | || || ||| |||| ||| Sbjct 4992 ATCATGGCAGTTCGTGGCATTAACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCG 4933 Query 33223 GAAGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAG 33282 ||||| || || || || ||||| ||| || ||| | || || || || Sbjct 4932 GAAGTCCGTTACATCCCCAACGGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAA 4873 Query 33283 CAGTGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTT 33342 ||| || ||| |||||||| | | |||||||||||||||||||||||||| Sbjct 4872 ACCTGGCGTGACAAACAGACAGGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTG 4813 Query 33343 ATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTAT 33402 | ||||| ||||| || || |||||||||||||| |||||||| ||| | ||||| || Sbjct 4812 CTGTTCGGCAAGCTCGCGGAAGTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTAC 4753 Query 33403 GTAGAAGG 33410 | ||||| Sbjct 4752 ATCGAAGG 4745 >seq3178 Length=10189 Score = 107 bits (118), Expect = 6e-19 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 4895 CCAGATTTTATTTACCGCATTCTCTCTGGCAATCTTGCGACCAATTTCAGCGTCGAAATT 4954 |||||| || | | | || |||| | |||||||||||| || | ||| |||||||| || Sbjct 5945 CCAGATCTTCTGTTCGGCGTTCTGGCGGGCAATCTTGCGGCCCACTTCGGCGTCGAAGTT 5886 Query 4955 CTCTGGACTGGCGCAGGCGCTTTCTCCTGTCACGGTGAAGCCGTTTTTCAGCACCAAGAC 5014 ||| ||||||||||| ||||| || || || |||||||| ||||| ||| |||| ||| Sbjct 5885 CTCCGGACTGGCGCATGCGCTCTCACCGGTGACGGTGAAACCGTTGCGCAGGACCAGGAC 5826 Query 5015 GCAAAAGGT 5023 || ||||| Sbjct 5825 ACAGAAGGT 5817 >seq3563 Length=1830 Score = 86.0 bits (94), Expect = 2e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 33249 CGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATAAAGCAACAGGGGA 33308 ||| ||| ||| ||| |||||| || || ||||||| ||| || ||| || | Sbjct 1163 CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCA 1222 Query 33309 AAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGCTGGCAGAGGTGGC 33368 ||| ||| | || |||||||| || ||| || ||||| ||| | |||||| | || Sbjct 1223 GAAGGTCGAGAAAACCGAATGGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGC 1282 Query 33369 TGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAA 33413 || ||||||||||||||||| || ||||| || | ||||| || Sbjct 1283 CGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAAGGCAA 1327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152030763794232