Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq385 140 1e-28 >seq385 Length=624889 Score = 140 bits (154), Expect = 1e-28 Identities = 197/274 (72%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 31531 GTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTTCGATCCCTTTTTCAG 31590 || ||||||||||||||| |||||| ||| || | ||||||||| ||||| || || Sbjct 29899 GTCCTGCCACTTGCGGGTCTGCAGCGCGCCTTCCAGATAAACCTTCATGCCCTTCTTGAG 29840 Query 31591 GTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGACGCTATGCCACTCGGT 31650 ||| || || |||||| | || ||| |||| | ||||||||| ||||| ||||| Sbjct 29839 GTACTGTTCAGCCACCTTGGCCAGGTTGTCGTTGAAAATGACGACGCTGTGCCATTCGGT 29780 Query 31651 GCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAG 31710 |||||||| |||||||||| ||||||||||||||| || || |||| ||| || Sbjct 29779 CTTTTCCTTGCGCTCGCCGCTGTTCTTGTCGCGCCAGCTTTCCGAGGTGGCAATGCGCAG 29720 Query 31711 GCTGGCGA-TGCTACCCCCGGCTTGTGTCTTTCGGATTTCCGGATCGGCGCCGAGATGGC 31769 || | | | | || | | | | |||| ||||||||| ||||| |||| | Sbjct 29719 ATTGACCACCGGATCGCCTGAACCGAGAC-GCCGGACTTCCGGATCAGCGCCAAGATTAC 29661 Query 31770 CGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 ||| | ||| || |||||||| || || ||||| Sbjct 29660 CGACCAAAATTACCTTGTTGACACTGCCAGCCAT 29627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169789124257632