Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq140 136 1e-27 seq3980 125 2e-24 seq3751 122 2e-23 seq3795 100 8e-17 seq2982 89.7 1e-13 >seq140 Length=20869 Score = 136 bits (150), Expect = 1e-27 Identities = 337/500 (67%), Gaps = 15/500 (3%) Strand=Plus/Plus Query 39275 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 39334 |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 20004 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 20063 Query 39335 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTG 39394 ||||| || ||||| | ||| || | ||| ||| ||||| | || | | | | Sbjct 20064 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCA-GAGAAGTTGTTGATATTT 20122 Query 39395 CCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC--CCCGCCGGGCTTACCA 39452 | | ||||| ||||| ||||| ||||| |||||||| || ||||| |||| |||| Sbjct 20123 CAGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCGC--GGCTGACCA 20180 Query 39453 CGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGT-CCGGCGAGAAC-G 39510 || || | ||||| ||| || | | | || || || |||| | | Sbjct 20181 CGCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTG 20238 Query 39511 ACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCC 39570 ||| | |||||| | | | || || || || | || || || || || || Sbjct 20239 ACAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACC 20298 Query 39571 AGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCA 39630 |||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| || Sbjct 20299 AGCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCA 20358 Query 39631 CGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTA 39689 | |||||||| | |||| | || | || ||| |||||| |||| | || ||| Sbjct 20359 CAGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTG 20417 Query 39690 TACCGGTGAGT--CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAG 39747 ||| | || | ||| ||||||| ||| ||| ||| | |||||| || | || | Sbjct 20418 TACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGG 20475 Query 39748 CAAGCCAGCGTCCCATCTGG 39767 || | | || | |||| || Sbjct 20476 CACGGTAACGGCTCATCGGG 20495 >seq3980 Length=861 Score = 125 bits (138), Expect = 2e-24 Identities = 161/217 (74%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 37253 CGTACGCAAAAATTATTG--TATCGTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAAC 37310 |||||| ||||| |||| ||| |||||||||||||||||||| |||||||||||||| Sbjct 509 CGTACGTAAAAA--ATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAAC 566 Query 37311 CCGCCGTCGAGCGGGTTTTGTC-GTTTCTGGGGCTGGGGATTCGTTGGTCCTGGTCTATT 37369 |||||||||||| |||||| | ||| || | || | ||| | || | || || Sbjct 567 CCGCCGTCGAGCTGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGAT--AACTCAATA 624 Query 37370 CCGCAGTTATCCATTGGTTCGGCTTCTTTGACGTTTCCGCTTCTAATTTGCTGTACATGA 37429 || |||||| || || || | ||| | ||||||| |||| ||||| ||| | Sbjct 625 CCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCTGCTT---TTTTGCGATACGTTG 681 Query 37430 TGTTCCCTCAATTTGCACCTGCTGTATCAGCGAGGTG 37466 | |||||||||||| |||| ||| | || |||||||| Sbjct 682 TATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTG 718 >seq3751 Length=10017 Score = 122 bits (134), Expect = 2e-23 Identities = 299/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 8822 CGGTTCACGATGACCGAGCAGCAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8881 || ||||| ||||||||| || | ||||| | ||| | || || || || | Sbjct 3429 CGCTTCACTCTGACCGAGCGCCAATCGCTGCTCAACTACGGCATCGCCACCGCTTACTAC 3370 Query 8882 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAATTCTTACGGG 8941 ||| |||| ||||||||||||| | ||||||| ||| ||| || | | ||| Sbjct 3369 GAAGGCGGTTACGTGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGC 3310 Query 8942 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGT--GCGTATGTACTGC 8999 ||||| || ||| || |||||||| || ||||| ||||| || | | | ||| Sbjct 3309 CAGGCGGACAATTCCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGC 3252 Query 9000 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 9059 || ||| | ||| || ||||| ||||||||||| ||||| || || ||||| | Sbjct 3251 GCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCA 3192 Query 9060 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTAATCAAAGGGGAACTGCTGG 9119 | |||||||| |||| ||| |||| ||||||||| ||| || || ||| | | Sbjct 3191 CGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTG 3132 Query 9120 CAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAGT 9179 | ||| |||| || | | || ||||| ||| ||| ||||| || Sbjct 3131 CCCAGTACGCCAAGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGC 3072 Query 9180 ACCTGGTTGTGGAGCGTGA-TGCCAGCGATCCGAACCGCCTGAACACGCTGTTCCCGCCT 9238 ||||| | || ||||| || ||||| || |||| ||| | ||| |||||||||||| Sbjct 3071 ACCTGATCGTCGAGCGCGACAGCCAG-GACCCGAGCCGGGTCAACGTGCTGTTCCCGCCG 3013 Query 9239 GACTATGTTAACCAGTTGCGTGTTTTTGC 9267 || || || ||| | |||| || || || Sbjct 3012 GATTACGTCAACGGGCTGCGGGTGTTCGC 2984 >seq3795 Length=1936 Score = 100 bits (110), Expect = 8e-17 Identities = 244/364 (67%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 39262 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 39321 |||||| | | || ||||| || ||||| || | || | ||| ||||| || Sbjct 1514 GTAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGA 1573 Query 39322 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 39381 ||||||||||||||| || || || ||||| |||||| |||| |||| ||||| | Sbjct 1574 GTTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCG 1633 Query 39382 CTGCCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGC 39441 ||| ||||||| | | ||| || || || |||||||||||| || ||| || || || Sbjct 1634 CTG-CCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCA-CCTGC 1691 Query 39442 CG-GGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCC 39500 | ||||| || || || | ||||| || || || || || ||| | ||| Sbjct 1692 TGTGGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCC 1751 Query 39501 GGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCG 39560 ||| || | |||||||| | | | | | |||| || || || ||||| Sbjct 1752 GGCTTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCC 1811 Query 39561 AGGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGAT 39618 ||||| |||||| ||| || |||||| ||||| | ||| |||||||| ||| | | Sbjct 1812 AGGTAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGT 1869 Query 39619 TTGG 39622 | || Sbjct 1870 TCGG 1873 >seq2982 Length=1456 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 24835 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 24886 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132586159012956