Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021867.1 Length=46978 Score E Sequences producing significant alignments: (Bits) Value seq1895 172 2e-38 >seq1895 Length=39466 Score = 172 bits (190), Expect = 2e-38 Identities = 348/508 (69%), Gaps = 15/508 (3%) Strand=Plus/Plus Query 35343 TGTGGTTGCTCACTTTCACTTAGTAATGGTATTTCTG--CATTGTACGGATTCTTTGCTG 35400 ||| || || ||||| ||| | || |||| || | |||| | | || ||| || | Sbjct 20404 TGTAGTAGCCCACTTCCACCTGGTTATGGGATCGGCGGCCATTTTTGGTATGCTT-GCAG 20462 Query 35401 GTGTTTACCACTGGTTTCCAAAAATGTTCGGGCGTATGATGAATAAAAATTTAGGTTATA 35460 | ||||| |||||||| || |||||||| || | |||||||| | || || | |||| Sbjct 20463 GGGTTTATCACTGGTTCCCTAAAATGTTTGGCAGAATGATGAACGATAAATTGGCTTATC 20522 Query 35461 TTCACTTTTGGATTACTGCAATTTGTGCTTA--TGGTGTTTTCTATCCAATGCACTTTAT 35518 |||| || ||| | ||| | |||||||| |||| |||| || |||||||| | Sbjct 20523 TTCATTTCTGGGTAACTTTTGTATGTGCTTACCTGGTATTTTTC--CCGCTGCACTTTTT 20580 Query 35519 AGGGATGGCTGGATTACCACGTCGTTACTACACAAATACTAACTTTCCATTATTTGATGA 35578 ||| ||| || |||||||||||||||| || |||| | ||| || | || | Sbjct 20581 AGGTCTGGACGGTGTACCACGTCGTTACTATGCATTTACTGAATTTGAGTT-TATGCAAA 20639 Query 35579 TTTAGCTGATGTGAATAAA-GTAATTACTACTTTTGCTTTGATTGGAGCAGCTTTC---C 35634 | | | | | |||| || || ||| | || || | |||||| | | Sbjct 20640 AATGGGTTAC---AGTAAACGTTTTTGTTACCTGGGCAGCAATCGTTGCAGCTCTAGCAC 20696 Query 35635 AATTGGTATTTATGTGGAATTTCTTTACTAGTATTTTTTACGGaaaaaaaGCTGTGCAAA 35694 || ||| || ||| || || || | ||||||| | || |||||||| |||| Sbjct 20697 AAGTGGCTTTCCTGTTTAACTTTTTCTATTCTATTTTTAAAGGTAAAAAAGCGCCACAAA 20756 Query 35695 ATCCATGGAGGTCTAATACTCTTGAGTGGACTACACCAGTGGAACATGTACATGGAAACT 35754 | || ||| || || || | |||||||||||||| ||||||||| | |||||||||| Sbjct 20757 ACCCTTGGGAATCCAACACATTGGAGTGGACTACACCTGTGGAACATCTGCATGGAAACT 20816 Query 35755 GGCCAGGTGCTATCCCAGAAGTTTATAGATGGCCTTATGATTACAGTAAACCAGGGCATG 35814 |||| |||| || ||| ||| || | ||||| ||||||||||| ||||| || || Sbjct 20817 GGCCTGGTGAAATTCCAACAGTATACCGTTGGCCATATGATTACAGCAAACCTGGAGCTG 20876 Query 35815 ACGAAGATTTTGTTCCTCAAACTGTGCC 35842 | |||||||| ||||||| || ||||| Sbjct 20877 AAGAAGATTTCATTCCTCAGACAGTGCC 20904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150194133360720