Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq540 138 1e-27 seq982 125 6e-24 seq322 123 2e-23 seq391 105 6e-18 seq332 87.8 2e-12 >seq540 Length=89862 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || | |||||||||||||| || | ||||| |||| | Sbjct 84087 ATGCAAATCTTTGTTAAGACCTTGACCGGTAAAACTATCACATTAGAAGTTGAAGGTTCT 84146 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || || ||| |||||||| |||||||| || || ||||| || Sbjct 84147 GACACCATTGAAAATGTCAAGACCAAA-ATCCAAGATAAAGAAGGTATCCCACCCGACCA 84205 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | ||||||||||| ||||| |||| ||| | | | | || |||||||| Sbjct 84206 ACAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGCCGTACCCTCTCTGATTATAA 84265 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||||||||||| || || || || || Sbjct 84266 CATCCAAAAGGAATCAACTCTCCATTTAGT 84295 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || ||||||| |||||||| || | ||||| |||| | Sbjct 83631 ATGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAGTTGAAGGTTCT 83690 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || || ||| |||||||| |||||||| || || ||||| || Sbjct 83691 GACACCATTGAAAATGTCAAGACCAAA-ATCCAAGATAAAGAAGGTATCCCACCCGACCA 83749 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | ||||||||||| ||||| |||| ||| | | | | || |||||||| Sbjct 83750 ACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAA 83809 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||||||||||| || || || ||||| Sbjct 83810 CATCCAAAAGGAATCAACCCTCCATTTGGT 83839 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| | ||||||||||| || || | ||||| || | | | Sbjct 83859 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACAATCACATTAGAAGTTGAGGGCTCT 83918 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| |||||||| || || ||||||||| Sbjct 83919 GACACCATTGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 83978 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || |||||||| ||||| |||| ||| | | | | || ||||||||| Sbjct 83979 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAAC 84038 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || || || || Sbjct 84039 ATCCAAAAAGAATCAACCCTTCATTTAGT 84067 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| | ||||||||||| || || | ||||| |||| | Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || || ||| |||||||| |||||||| || || |||||||| Sbjct 84375 GACACCATTGAAAATGTCAAGACCAAA-ATCCAAGATAAAGAAGGTATCCCACCCGATCA 84433 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | || |||||||| ||||| |||| ||| | | | | || ||||| || Sbjct 84434 ACAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAA 84493 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||| ||||| ||||| || || || Sbjct 84494 CATCCAAAAAGAATCAACCCTCCA 84517 >seq982 Length=41121 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | ||||||||||| || || | ||||| |||| | Sbjct 2366 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTCGAAGGTTCT 2307 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||||||||| || || ||||| ||| Sbjct 2306 GACACCATCGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 2247 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||||||||| ||||| |||| ||| | | | || || || ||| Sbjct 2246 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2187 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || || || ||||| Sbjct 2186 ATCCAAAAGGAATCAACCCTCCATTTGGT 2158 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | |||||||||||||| || | ||||| |||| | Sbjct 2594 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCT 2535 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||||||||| || || ||||||||| Sbjct 2534 GACACCATTGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2475 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || ||||| |||| ||| | | | || || || ||| Sbjct 2474 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2415 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||||| || || || ||||| Sbjct 2414 ATTCAAAAGGAATCAACCCTCCATTTGGT 2386 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | |||||||||||||| || | || ||||||| | Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||||||||| || || ||||||||| Sbjct 2078 GACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2019 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || ||||| |||| ||| | | | | || ||||| ||| Sbjct 2018 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 1959 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || || || || Sbjct 1958 ATCCAAAAAGAATCTACTCTCCATTTAGT 1930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | ||||||||||| || || | ||||| |||| | Sbjct 2822 ATGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAAGGTTCT 2763 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| |||||||||||||| || || || |||||| Sbjct 2762 GACACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAA 2703 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || ||||| ||||| | || ||| | | | || || || ||| Sbjct 2702 CAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGACTACAAC 2643 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || || || || Sbjct 2642 ATCCAAAAAGAATCAACTCTCCATTTAGT 2614 >seq322 Length=112280 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | ||||||||||||||||| | ||||| |||| | Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 24764 GACACAGTAG-AAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | | ||||| |||||| ||| ||||||||||||||||| || || |||||||| Sbjct 11293 GACACCATCGAAAACGTTAAAACCAAA-ATCCAAGACAAAGAAGGTATCCCACCCGATCA 11351 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | || ||||| || ||||| |||| ||| | | | || || || || Sbjct 11352 ACAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAA 11411 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||||| ||||| || || || || || Sbjct 11412 CATCCAAAAAGAATCAACTCTCCATTTAGT 11441 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | ||||||||||| || || | |||||||||| | Sbjct 11689 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCT 11748 Query 24764 GACA-CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | || | ||||| || || ||| ||||||||||||||||| || || |||||||| Sbjct 11749 GATACCATTGAAAACGTCAAGACCAAA-ATCCAAGACAAAGAAGGTATCCCACCCGATCA 11807 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | || ||||| || ||||| | || ||| | | | || || || || Sbjct 11808 ACAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAA 11867 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||||| ||||| ||||| || ||||| Sbjct 11868 CATCCAAAAAGAATCAACACTCCATTTGGT 11897 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | ||||||||||||||||| | ||||| |||| | | Sbjct 11917 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCT 11976 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| || ||||| || || ||||||||| Sbjct 11977 GACACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 12036 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || ||||| || || || |||| ||| | | | | || || || ||| Sbjct 12037 CAAAGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAAC 12096 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || || || || Sbjct 12097 ATCCAAAAAGAATCAACTCTCCATTTAGT 12125 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | ||||||||||||||||| | ||||| |||| | Sbjct 11005 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11064 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || || ||| ||||||||||||||||| || || ||||| || Sbjct 11065 GATACCATTGAAAATGTCAAGACCAAA-ATCCAAGACAAAGAAGGTATCCCACCCGACCA 11123 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | || ||||| || ||||| | || ||| | | | || || || || Sbjct 11124 ACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAA 11183 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||| ||||| || || || || || | || || | ||||| Sbjct 11184 CATCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTTTAAGAGGAGG 11231 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | ||||||||||||||||| | ||||| |||| | Sbjct 11461 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11520 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| |||||||||||||||||||| || || ||||| ||| Sbjct 11521 GATACCATTGAGAATGTAAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 11580 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || ||||| || ||||| | || || | | | | || || || ||| Sbjct 11581 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGACTACAAC 11640 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || || || || Sbjct 11641 ATCCAAAAAGAATCTACTCTCCATTTAGT 11669 >seq391 Length=66319 Score = 105 bits (116), Expect = 6e-18 Identities = 136/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 ||||| || ||||| ||||||||||| | | ||||| | |||| || || || Sbjct 37409 GGTAAGACGATTACTCTCGAAGTAGAGGGATCAGACACCATCGAAAACGTCAAGGCTAAA 37350 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||||||||| || || |||||||||||| | | |||||||| || ||||| Sbjct 37349 ATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAA 37290 Query 24851 CTGGAGGAT--TCGAGAAACATGTC-AGATTATAACATTCAAAAGGAATCGACACTACAC 24907 | || ||| ||| || | | |||||| ||||| ||||||||||| || || || Sbjct 37289 TTAGAAGATGGTCG---TACTTTACAAGATTACAACATCCAAAAGGAATCAACCCTCCAT 37233 Query 24908 TTGGT 24912 || || Sbjct 37232 TTAGT 37228 >seq332 Length=17232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || |||| || || || || ||||| || || |||||| ||| ||||| | Sbjct 5296 AATTGATGCTAAATTACAAACAGCAACTTCATCAGGTGATGTGTATTGGACGATTTCAGT 5237 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 ||| ||||||||||| | || ||||| | ||||||||||||| ||| |||||||| Sbjct 5236 ACATAAATTACTACATTGAATGGTACCGAGATTTTGTTGATTGGATTTAGCATTACAAGC 5177 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 |||||| || | | | || || |||||||| Sbjct 5176 ATCTTTATATAAAAAGAATGGAGTACCAGTTTC 5144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449853881200720