Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq701 264 2e-65 seq1822 118 2e-21 seq1621 111 3e-19 seq2234 91.5 2e-13 seq1686 91.5 2e-13 seq54 91.5 2e-13 >seq701 Length=6676 Score = 264 bits (292), Expect = 2e-65 Identities = 314/420 (75%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524 ||||||||| || || ||||| || ||||| || || | |||||| || ||||| || Sbjct 4167 CTGGCCCTGATACTTGCCGCCACGGTCCTTATAGGACACTTCGCACTCTTCGTCGGATTC 4108 Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGG----CAGGTTGG 35580 ||| ||||||||||||||||| |||||||| ||||| | ||||| || | ||| Sbjct 4107 GAAGAACAGCATCTGCGCCACGCCTTCGTTGGCGTAGATTTTTGCCGGNNNGCAAGGTGG 4048 Query 35581 TAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGT 35640 | |||||| ||||||||| || || || |||||||| || || |||||||||||||||| Sbjct 4047 TGGTGTTGGAGAACTCCAGGGTGACGTGCCCTTCCCATTCCGGCTCCAGCGGCGTCACGT 3988 Query 35641 TGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGC 35700 |||||||||| || ||||||||||||||||| || |||| || | ||||| || | Sbjct 3987 TGACGATGATGCCGCAGCGCGCGTAGGTGCTTTTGCCCAGGCAGATAGTCAGGACATTAC 3928 Query 35701 GCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGA 35760 |||| || |||||| ||||||| ||||| ||||| || ||| ||| ||||| || | | Sbjct 3927 GCGGGATACGGAAGAATTCGACGGTGCGCGCCAGGGCAAAGGAGTTTGGCGGGATGATGC 3868 Query 35761 TGCTGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACT 35819 | ||| ||| | || | | | || || |||||||| |||||||| || | Sbjct 3867 AGACGTCGCTCTTGA-CGTCGACGAAGCTTTTTTCGTCGAAGTTTTTCGGATCGACGGTT 3809 Query 35820 GCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACGTCATAACCATA 35878 || ||||||||||||||| || | |||||||||| ||| || ||||| || || || Sbjct 3808 GCCGAGTTGATGTTGGTGAACACCTTGAACTCATCGGC-GCAGCGTACGTCGTAGCCGTA 3750 >seq1822 Length=14309 Score = 118 bits (130), Expect = 2e-21 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 366 GCCGGTATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 425 Query 120288 CCTGATGCCGGCACCATA 120305 |||| ||||||||||||| Sbjct 426 CCTGGTGCCGGCACCATA 443 >seq1621 Length=12765 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062 || |||| ||||||||||||||||||||||||||||| || || | || || || || | Sbjct 60 GTTCCAGGCGTGCGATGATTTCGGAGTTCATGCTGCGGTGATGATTGCGAGCCACCTCGG 119 Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGCTG 247121 | |||||||| ||||| || || |||| ||| ||||| |||||||| || | |||||| Sbjct 120 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAACTTGTCAGCCGTACGGCTG 178 >seq2234 Length=2923 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 122603 TTCGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCG 122662 || |||||||||||||||||||||||||| ||||||||| ||||||| |||||| Sbjct 81 TTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCG 140 Query 122663 AGTCCAACACGACCCACCAGTTT 122685 | ||| ||||||||||||| ||| Sbjct 141 AATCCCACACGACCCACCATTTT 163 >seq1686 Length=12041 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 122603 TTCGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCG 122662 || |||||||||||||||||||||||||| ||||||||| ||||||| |||||| Sbjct 10801 TTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCG 10860 Query 122663 AGTCCAACACGACCCACCAGTTT 122685 | ||| ||||||||||||| ||| Sbjct 10861 AATCCCACACGACCCACCATTTT 10883 >seq54 Length=99412 Score = 91.5 bits (100), Expect = 2e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 46779 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCTGGTTCGATCCC 46833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825836541534960