Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3596 145 1e-28 seq54 138 2e-26 seq5201 125 1e-22 >seq3596 Length=2072 Score = 145 bits (160), Expect = 1e-28 Identities = 222/312 (71%), Gaps = 11/312 (4%) Strand=Plus/Plus Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415 ||||| || || |||||| || || ||||| ||||| | || || | ||| ||||| Sbjct 73 ATCAACTCATTACTAAAGGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATC 132 Query 794416 GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAAGCCGACGAGCCGCTC 794474 | |||||| || || ||| || ||||| || || ||||| |||||| || | || || Sbjct 133 GAACAGAAGCTCCCGCTGAAGAAAATGCCTTCCACTGCGGCGAAAGCC-ACCAAACGTTC 191 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCT 794534 ||||||| | ||| |||||| ||||| || ||||| ||||| |||||| | Sbjct 192 GGCAAAATT-TCC--GCCCTCA------ATCCAGCGCAATGCCCATTCTGCTTTTTTCTT 242 Query 794535 CACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGAC 794594 || | || ||||| || | ||| | || || ||| || || | || || || | Sbjct 243 TACACAAGGAACCGTCTCTACGGCATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAAT 302 Query 794595 GTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAA 794654 ||||| ||||| || |||| ||||| || |||||||||||||| || ||||||||| Sbjct 303 ATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAA 362 Query 794655 GCCATAAAAGCA 794666 ||||||||| || Sbjct 363 GCCATAAAAACA 374 >seq54 Length=99412 Score = 138 bits (152), Expect = 2e-26 Identities = 230/332 (69%), Gaps = 13/332 (4%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| | | || | ||||||| |||| || |||||||| | || | || Sbjct 88599 CCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAGCTAAGACCGGGCATTAATCCCCTTTTT 88540 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | || || || || ||||| || ||||| || || || |||||| Sbjct 88539 TTGAGCCAGAAGATCGAGCAAAAGCTACCAGAGAAGAAAATGCCTTCTACAGCTGCAAAG 88480 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | ||| | || |||||| | | ||| || ||||| | ||||| Sbjct 88479 GCAATGAGTCTTTCAGCAAAACT---------CGCTTGGTCTATCCAACGTAAAGCCCAT 88429 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGT--CCTTCT 794578 ||||| |||||| | || || | ||||||||||| || ||| | | | |||| Sbjct 88428 TCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGATGGCATTGAAAAGGCGATTTCTTTCT 88369 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || || ||||| | |||||| || |||||||| || ||||| ||||| ||||| || | Sbjct 88368 TGA--GGATCCTTAATGTAGGTATCAATGAGGAGTGAATAGGTTTCTGAATGGATATTCT 88311 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 | | || |||||||||||||||||| | ||| Sbjct 88310 CTACAGCAATCTGGAAGCCATAAAAGAATTTG 88279 >seq5201 Length=2668 Score = 125 bits (138), Expect = 1e-22 Identities = 272/399 (68%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 118640 CACGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCGTGACCTCGCT 118699 || ||||||||| | |||||| ||| || | ||||| | ||||| ||||||| ||| Sbjct 2663 CATGCACATGTGCTTGGCCTCGATCACCACTGCAACGCCCAGGGCGCCGGTGACCT-GCT 2605 Query 118700 GATGCTC-TCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCA 118758 | | | |||||||||||||| |||| ||||| | ||| | |||| | || Sbjct 2604 GGACCGCATCGGCGATCTGGCGGCTGAGGTTTTCCTGGATCTGCAGGCGGCGGGCATACA 2545 Query 118759 TGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCC-CGCGGGCAGGTAGCCC 118817 | |||||||| |||| || ||| |||||| | | |||| | |||| | || | Sbjct 2544 TATCGACGATACGCGCGACCTTCGACAGGCCCAGCACTTTGCCGCTCGGG-ATATACGCG 2486 Query 118818 ACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATG 118877 ||||| ||||||||||| || |||||||| ||||| ||||||| ||| | || || ||| Sbjct 2485 ACGTGAGCCTTGCCGATGAACGGCAGCAGGTGGTGTTCGCACAGCGAGTACAACTCGATG 2426 Query 118878 TCGCGCACGGTCACCATCTCGCCCGACGTCTCGGC-AAAGAGGGCGTCGCCGACGGCCTC 118936 || || |||||| ||| | | ||| || || | ||| || | | | || Sbjct 2425 TCCTTGACCAGCACCATTTCG-CTGTTGTCAGAGCTGAACAAGGCACCGTTGGTGACTTC 2367 Query 118937 GGCCAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATGGG 118996 | |||||| | | ||||| | | | | |||||||||||| | || | || Sbjct 2366 TTCGAGGGTCTGTTCATAACCGCGGCAGAGATACTGCATGGCCTTGGCGGCACGTTTTGG 2307 Query 118997 CGTGTCCAAGAGGCCCTCGCGCGCCACGTCCTCGCCCAG 119035 |||||| | ||||||||||| | ||||||||||| || Sbjct 2306 CGTGTCGAGCAGGCCCTCGCGGGAAACGTCCTCGCCGAG 2268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915419444162786