Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq1768 257 4e-64 seq140 250 5e-62 seq7673 122 2e-23 seq1445 116 8e-22 >seq1768 Length=12341 Score = 257 bits (284), Expect = 4e-64 Identities = 171/189 (90%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 26365 CAACAGCGATCCTGGATCGGCTGCTACATCACTCAACCACGCTGAATATCAAAGGAGAGA 26424 |||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||| Sbjct 9829 CAACAGCGCTCCTGGATTGACTGCTGCATCACTCAACCACGCTGAATATCAAAGGAGAGC 9888 Query 26425 GTTACCGGTTAAAAGAGAAACGTAAAGCTGGAGTGCTGACCAAAAACACAACGCCAATCA 26484 |||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||| ||| Sbjct 9889 GTTACCGGTTAAAAGAGAAACGTAAAGCTGTGGTGATGACCCAAAACGCAACGCCTGTCA 9948 Query 26485 GTGATGATGAAATGGTGGAAAGCGGACAGCATCAGTAACGAAAGTAT-TTAGCGGGCATG 26543 |||| |||||||||||| |||||||||||||||||||||| |||||| |||||||| | | Sbjct 9949 GTGAGGATGAAATGGTGAAAAGCGGACAGCATCAGTAACGGAAGTATCTTAGCGGGTACG 10008 Query 26544 AAAATGGCA 26552 ||||||||| Sbjct 10009 AAAATGGCA 10017 Score = 233 bits (258), Expect = 4e-57 Identities = 174/203 (86%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 24752 CAGAGAATGTCTGGAATAGCGAGGTTATCTTCGCGGAGATTAAGGCAATGGGTTATACGG 24811 ||||||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||| Sbjct 9630 CAGAGAATGTCCGGAATGACGAGGTTATCTTTGCGGAGATTAAGGCAATGGGCTATACGG 9689 Query 24812 GCGGACGTTCCATGCTGCGTTACTACATCCAGCCCAAACGTAAAATGCGTCCGTCAAAAA 24871 || || ||||||||| |||||||||||| |||||| |||||||||||| |||||||||| Sbjct 9690 GCCGATGTTCCATGCCGCGTTACTACATTCAGCCCGGACGTAAAATGCGCCCGTCAAAAA 9749 Query 24872 GAACAGTTCGCTTCGAAACTCAGCCTGGATACCA--GCTCCAGCATGACTGGGGCGAAGT 24929 |||| |||||||||||||||||||| |||||||| |||| || | ||| ||||| Sbjct 9750 GAACGGTTCGCTTCGAAACTCAGCCAGGATACCACCTCTCCGCCACACCCGGGAAGAAGT 9809 Query 24930 TGAGGTGGAGGTTGCCGGGCAAC 24952 ||| ||| ||||||||| |||| Sbjct 9810 TGATATGGTGGTTGCCGGACAAC 9832 Score = 131 bits (144), Expect = 4e-26 Identities = 84/92 (91%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 24669 ATACCCTGAACCGCCAGCCAGAAAGACCCGCCACAAAATGGTTAAGCTGAAACCGTTTAT 24728 || |||||||||||||||||||||||| ||||||||| || |||||||||| ||||||| Sbjct 7102 ATCCCCTGAACCGCCAGCCAGAAAGACTGGCCACAAAAGGGGTAAGCTGAAATCGTTTAT 7161 Query 24729 GGATTACATCGACATGCGCCTGGCAGAGAATG 24760 ||||||||||||||| ||||||||||||||| Sbjct 7162 GGATTACATCGACATATGCCTGGCAGAGAATG 7193 >seq140 Length=20869 Score = 250 bits (276), Expect = 5e-62 Identities = 175/198 (88%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 24454 TCAGCGCCAGTGATATAAGACGGTAATTCGCCATTTGGATTGTC-CGCTCCACCCAACAT 24512 ||||||||| |||||||||||||||| || ||||||||||| | || |||| ||||||| Sbjct 677 TCAGCGCCAATGATATAAGACGGTAAATCACCATTTGGATTAGCTCGATCCATCCAACAT 618 Query 24513 GTTGTTTCCTTAAGGTTCTCACACCAGAAAGGACATCAACATGCTGAGCAGAGAGGACTT 24572 |||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||| Sbjct 617 GTTGTTTCCTGGAGGTTCTCACATCAGAAAGGACATCAACATACTGAGCAGAGAAGACTT 558 Query 24573 TTACATGATAAAGCAAATGCGCCAGCAGGGCGCGTACATCGTCGATATTGCGACTCAGAT 24632 ||| ||| |||||||||||||| ||||||||| |||||| |||||||||||||||||| | Sbjct 557 TTAGATGGTAAAGCAAATGCGCTAGCAGGGCGAGTACATTGTCGATATTGCGACTCAGGT 498 Query 24633 TGGTTGCTCTGAACGGAC 24650 ||||| ||||| || || Sbjct 497 TGGTTATTCTGAGCGAAC 480 >seq7673 Length=393 Score = 122 bits (134), Expect = 2e-23 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 12625 AGGATGCCACCACAGCGCGAAAAGGTCTTGTCCAGCTCAGTAGCGCCACCAACAGCGATT 12684 ||||||| | ||| || ||| || | || |||||||| || || ||||||||| || Sbjct 177 AGGATGCGAGCACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGCACTT 118 Query 12685 CTGAAACGCTTGCGGCAACACCAAAAGCGGTGAAGTCTGCCTATGACAATGCTGAAAAAC 12744 | || | || |||||||| ||||| || || || | |||||||||||||| || |||| Sbjct 117 CCGAGTCACTGGCGGCAACGCCAAAGGCAGTAAAAGCAGCCTATGACAATGCAGAGAAAC 58 Query 12745 GTCTTCAGAAAGATCAGAACGGTGCGGATATTCCGGGAAAGG 12786 |||| |||||||| |||||||| || ||||| || | |||| Sbjct 57 GTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGG 16 >seq1445 Length=14432 Score = 116 bits (128), Expect = 8e-22 Identities = 274/408 (67%), Gaps = 7/408 (2%) Strand=Plus/Plus Query 336 CCCGACGTTCTCCGGCTTGCCGCCCATCAACTGAAAGGGGATGCGGTGTGCGTCCAGCAG 395 |||| |||||| |||| | |||||||||||| || ||||| || | ||||| Sbjct 11908 CCCG-CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAG 11966 Query 396 GTCAGCGGCGCTGGCTTTTTTGATATTaaaaaaaTCGTCCTTCGTCGCCACTTCACTGAG 455 || | |||| |||||||| || |||||||| | ||| || || || | Sbjct 11967 ATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCAC 12026 Query 456 CGGGATAATTTTAATGCCGTCGGCTTTCCCTTGCGGGGCATAGAGAAACAGATTTTTAAA 515 |||||| | | ||||||||| || ||| ||| || || | |||||| || ||| Sbjct 12027 CGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCGAAA 12086 Query 516 GTTGTTGCGGCCTTTCGACTTCACCA-TGTTTTCGCGGAGCATTTCGATATCGTTGCGAT 574 |||| | |||||||| ||| || || | ||| || ||||| || | | Sbjct 12087 GTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGT-GCGCAGTGAGTCGATGTCCTCTTCCT 12145 Query 575 CCTGCACGGCATCGGTGACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACT 634 |||| | || ||||| | ||||| ||| | |||||||| |||||| | ||| |||| Sbjct 12146 TCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGTACT 12205 Query 635 TGCGGCGGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTG--AGATA 692 |||| |||||||||||||| ||| || ||| || || |||||| || | Sbjct 12206 TGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGC--GCTTTGCAGCGCTGCCAGCCA 12263 Query 693 TTCCGGCAGGCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTG 740 |||||||||||||| | ||||| || ||||| | ||| ||| ||| Sbjct 12264 CTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTG 12311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107478077110920