Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq7157 187 7e-43 seq3563 134 4e-27 seq1617 118 3e-22 seq1500 109 2e-19 seq4209 102 2e-17 seq1412 100 8e-17 seq385 89.7 1e-13 seq3248 84.2 6e-12 seq2158 84.2 6e-12 seq520 82.4 2e-11 >seq7157 Length=721 Score = 187 bits (206), Expect = 7e-43 Identities = 220/298 (74%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 23414 GGCGACCACCAAGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGT 23473 ||||||| || |||||| ||||| ||| | | ||| || || || |||||||||| Sbjct 51 GGCGACCGCCGAGCAGCTGAAGTCGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGT 110 Query 23474 AGTTGGTCGCGCCGTCTTTTTCCCACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCATT 23533 || || | |||||||||||||||| ||| || | || |||| || ||| | Sbjct 111 AGCGTTTCACTCCGTCTTTTTCCCACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACT 170 Query 23534 CACTTCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGC 23593 || || || ||||||||||| || || || ||||||| ||||||||||||||| |||| Sbjct 171 GGCTCCCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGC 230 Query 23594 GGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACG 23653 ||||||| ||||| |||| ||| |||||||||||| || |||||| |||| | Sbjct 231 GGTGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGG 290 Query 23654 TGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 |||||||| | ||||| ||||| | |||||| | |||||| ||||||||||| Sbjct 291 TGGCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTC 348 >seq3563 Length=1830 Score = 134 bits (148), Expect = 4e-27 Identities = 192/268 (72%), Gaps = 12/268 (4%) Strand=Plus/Minus Query 23450 TGTCCACCACAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTG 23506 |||| ||||| ||||| |||||||| ||| | ||||||||||||||||| ||| | Sbjct 1392 TGTCGACCACGATTTCAGTGGTGTAACGCTTGAT---GCCGTCTTTTTCCCACTCGCGGG 1336 Query 23507 TCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566 | ||||||||||| ||| | | || |||||||| || || ||||| |||| Sbjct 1335 TTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACCGGCGATCT 1276 Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTT---CCTTGCGCTCGC 23623 | || ||||||||||| | | || |||||||||||||| || | |||| || || Sbjct 1275 CTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT---CTGGC 1219 Query 23624 CGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGC 23683 |||| |||||||| |||| ||| || ||||| || | |||| ||||| | | Sbjct 1218 CGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTAC 1159 Query 23684 CGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 |||| ||| |||||| ||||| || || Sbjct 1158 CGTTCGGCAAGTAGCGAACTTCGGGATC 1131 >seq1617 Length=5386 Score = 118 bits (130), Expect = 3e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 |||||||||||||| ||||| || | || |||| ||||||||| | ||| ||||| ||| Sbjct 4766 CCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGC 4825 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 ||||| |||| ||| ||| || ||||| ||||| |||||||||||||||||| Sbjct 4826 CATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCG 4885 Query 23659 AGGCTG-ATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACC 23717 | ||| | ||| || || | ||||| | | ||| || |||||||| || || || Sbjct 4886 A-CCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCC 4944 Query 23718 CAGGCGGCC 23726 |||||| || Sbjct 4945 CAGGCGTCC 4953 >seq1500 Length=48209 Score = 109 bits (120), Expect = 2e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 |||||||||||||| || || || | || |||| ||||||||| | ||| ||||||||| Sbjct 46661 CCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGC 46720 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 ||||| |||| ||| ||| || ||||| ||||| |||| |||| || |||||| Sbjct 46721 CATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCC 46780 Query 23659 AGGCTG-ATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACC 23717 | ||| | ||| || || | ||||| | | ||| || |||||||| ||||| || Sbjct 46781 A-CCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 46839 Query 23718 CAGGCGGCCAATCAGGTCTACTTTGTT 23744 ||| || || | ||| || ||||| Sbjct 46840 CAGACGCCCGACGAGGATGACCTTGTT 46866 >seq4209 Length=1822 Score = 102 bits (112), Expect = 2e-17 Identities = 231/336 (69%), Gaps = 21/336 (6%) Strand=Plus/Plus Query 23418 ACCACCAAGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGTA--G 23475 |||||| || ||| | | | ||| ||| | |||| || | ||||||||||||||| | Sbjct 327 ACCACCCAGGAGCTGCATTCTGCC-CTGCA--TGTCGACGATAATTTCGGTGGTGTACCG 383 Query 23476 TTGGTCGCGCCGTCTTTTTCCCACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCATTCA 23535 || | | ||||||||||||||| ||||| || ||||| || ||| | || | Sbjct 384 TTTGATAC--CGTCTTTTTCCCACTCTCGTGTTTGAAGCTTACCTTCGAT---GTATAC- 437 Query 23536 CT----TCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGAC 23591 || ||| || ||||||||||| || || || || ||||| || || || || || Sbjct 438 CTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAAC 497 Query 23592 GCGGTGCCATTCGGTCTTTTC--CTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCC 23649 |||||||||||||||||||| ||| || || || |||||||| |||| || Sbjct 498 ACGGTGCCATTCGGTCTTTTCGACTT--TCTGTCCCGTTTGCTTGTCAGTCCACTGCTCA 555 Query 23650 GACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGG 23709 || || ||||||| ||| || |||| ||||| | | |||||| ||| || Sbjct 556 CTTGTTGCAAGGCTGAGATTGGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGA 615 Query 23710 TCATTACC-CAGGCGGCCAATCAGGTCTACTTTGTT 23744 || | ||| |||| ||||| || | ||||| || Sbjct 616 TCTTGACCACAGG-TGCCAACCAAGATCACTTTATT 650 >seq1412 Length=10105 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||| ||||| ||||||||| |||| | ||||||||||||| |||||||||| Sbjct 1826 ATGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATC 1885 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||||||| Sbjct 1886 CAGCTGAGCTACGGG 1900 >seq385 Length=624889 Score = 89.7 bits (98), Expect = 1e-13 Identities = 123/170 (72%), Gaps = 13/170 (8%) Strand=Plus/Minus Query 23496 CCACTTGCGTGTCTGCAGCTTGCC-----GATGATCGCGCATTCACTTCCCTTGCGCAGA 23550 ||||||||| ||||||||| ||| ||| | | ||| | |||| ||| || Sbjct 29893 CCACTTGCGGGTCTGCAGCGCGCCTTCCAGATAAACCTTCATGCCCTTC--TTG---AGG 29839 Query 23551 TACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACA---CGACGCGGTGCCATTCGGTC 23607 |||| | || | || ||| | ||| || ||| | |||||| ||||||||||||| Sbjct 29838 TACTGTTCAGCCACCTTGGCCAGGTTGTCGTTGAAAATGACGACGCTGTGCCATTCGGTC 29779 Query 23608 TTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGC 23657 |||||||||||||||||| | | |||||| |||| ||||||| ||||| Sbjct 29778 TTTTCCTTGCGCTCGCCGCTGTTCTTGTCGCGCCAGCTTTCCGAGGTGGC 29729 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 |||||| |||| | ||||||||||| | |||||| ||||||||||| |||||||||| Sbjct 544395 TGGCGATCCCGGCTGGATTCGAACCAGCGACCGTCGGCTTAGAAGGCCGGTGCTCTATCC 544454 Query 21123 AGCTGAGCTACGGGGCC 21139 |||||||||||||| || Sbjct 544455 AGCTGAGCTACGGGACC 544471 >seq3248 Length=8019 Score = 84.2 bits (92), Expect = 6e-12 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 21072 CGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCT 21131 |||||||||||||||||||||||| ||| || | || ||| | ||||||||||||||||| Sbjct 2019 CGACAGGATTCGAACCTGTGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCT 2078 Query 21132 ACG-GGGCCGATT 21143 ||| | || |||| Sbjct 2079 ACGAGTGCAGATT 2091 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 21072 CGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCT 21131 |||||||||||||||||||||||| ||| || | || ||| | ||||||||||||||||| Sbjct 2168 CGACAGGATTCGAACCTGTGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCT 2227 Query 21132 ACG 21134 ||| Sbjct 2228 ACG 2230 >seq2158 Length=12434 Score = 84.2 bits (92), Expect = 6e-12 Identities = 88/114 (77%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 34842 GTGTGTGAGGGTTATTCGACGGGCGCCAGCATCCACATGGCAAC--CGGTCACTGCGTGG 34899 ||||||||||| || | |||||||| ||| | |||||||| || || ||||| || | Sbjct 4152 GTGTGTGAGGGCTACGCCACGGGCGCAAGCCTGCACATGGCGACGTCGCTCACT--GTCG 4209 Query 34900 CCGTGGCGTTCGACGCGGGCAACGTGCCGACCATTGCCAGAGCCATGCGCGAGC 34953 || | || ||||||||||||||| ||| | | | ||| ||||||||||||| Sbjct 4210 CCATCGCCTTCGACGCGGGCAACCTGCTGCCTGTCTCCAAGGCCATGCGCGAGC 4263 >seq520 Length=453493 Score = 82.4 bits (90), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| ||||||||||||||||||||||||| | ||| | ||| | |||||||| Sbjct 386740 ATGGCGCACCCGACAGGATTCGAACCTGTGACCTCTGCCTTCGGAGGGCAGCGCTCTATC 386681 Query 21122 CAGCTGAGCTACGGGGCCGATTAGGCGGCG 21151 ||||||||||||||| | || |||| ||| Sbjct 386680 CAGCTGAGCTACGGGTGC-ATGAGGCTGCG 386652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139270341897288