Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq322 168 1e-36 seq540 159 5e-34 seq982 150 3e-31 seq391 123 4e-23 seq339 96.9 5e-15 >seq322 Length=112280 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || || || || |||||||| || | || |||||| | | Sbjct 11690 TGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCTG 11749 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || || | ||||| ||| |||||||| || ||||||||||||| Sbjct 11750 ATACCATTGAAAACGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAAC 11809 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||||||||| |||||||||||||| ||| | | || | | || || || | Sbjct 11810 AAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACA 11869 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || ||||||| ||| | |||||||||| |||| Sbjct 11870 TCCAAAAAGAATCAACACTCCATTTGGTACTTAGATTAAGAGGTGGTA 11917 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || || || || ||||| ||||| | || || ||| | | Sbjct 11006 TGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCTG 11065 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || | ||||| ||| |||||||| || |||||||| |||| Sbjct 11066 ATACCATTGAAAATGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAAC 11125 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| |||||||||||||| ||| | | || | | || || || | Sbjct 11126 AAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACA 11185 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | ||||||||| | || ||||||||||||| Sbjct 11186 TCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTTTAAGAGGAGGTA 11233 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || || || || ||||| ||||| | || || ||| | | Sbjct 11462 TGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCTG 11521 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | |||||||| | || || ||| |||||||| || |||||||| |||| Sbjct 11522 ATACCATTGAGAATGTAAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAAC 11581 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||||||||| |||||||||||||| || | | || | | || || || | Sbjct 11582 AAAGACTCATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGACTACAACA 11641 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| |||||||||| | || | ||||| |||| Sbjct 11642 TCCAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTTAGAGGTGGTA 11689 Score = 145 bits (160), Expect = 1e-29 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || || || ||||| ||||| | || || ||| | | Sbjct 11234 TGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCTG 11293 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || |||| ||||| ||| |||||||| || ||||||||||||| Sbjct 11294 ACACCATCGAAAACGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAAC 11353 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||||||||| || ||| | | || ||| | || || || | Sbjct 11354 AAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAACA 11413 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| |||||||||| Sbjct 11414 TCCAAAAAGAATCAACTCTCCATTTAGT 11441 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || || || ||||| ||||| | || || ||| | Sbjct 11918 TGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCTG 11977 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || | || || ||| ||| ||||| || ||||||||||||| Sbjct 11978 ACACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAAC 12037 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||| ||||| || ||| | | || | | || || || | Sbjct 12038 AAAGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAACA 12097 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATA 146267 | ||||||||||| ||| |||||||||| | || | ||||| || || |||||| Sbjct 12098 TCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAATTAAATA 12153 >seq540 Length=89862 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || ||||| |||||||| || || | || || ||| | | Sbjct 83632 TGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAGTTGAAGGTTCTG 83691 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || | ||||| ||| ||||||||| || |||||||| |||| Sbjct 83692 ACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAAC 83751 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| ||||||||||| || ||| | | || | | |||||||| | Sbjct 83752 AAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAACA 83811 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || ||||||| ||| | |||||||||| |||| Sbjct 83812 TCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGGTA 83859 Score = 158 bits (174), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| || || || ||||| || || | || || ||| | | Sbjct 84316 TGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCTG 84375 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || | ||||| ||| ||||||||| || ||||||||||||| Sbjct 84376 ACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAAC 84435 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||||||||| || ||| | | || | | ||||| || | Sbjct 84436 AAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAACA 84495 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTGA 146271 | ||||||||||| || ||||| | || | |||||||||| ||||| |||| ||| | Sbjct 84496 TCCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATTAAGAGGTGGTAATTAAA-ATTAA 84554 Query 146272 AAAT 146275 | || Sbjct 84555 ACAT 84558 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| || || || |||||||| || | || || || | Sbjct 83860 TGCAAATTTTTGTTAAAACCTTGACCGGTAAAACAATCACATTAGAAGTTGAGGGCTCTG 83919 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || | || || ||| ||||||||| || ||||||||||||| Sbjct 83920 ACACCATTGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAAC 83979 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||||||||| || ||| | | || | | |||||||| | Sbjct 83980 AAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAACA 84039 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | |||||||| | || | ||||| |||| Sbjct 84040 TCCAAAAAGAATCAACCCTTCATTTAGTCCTCAGACTTAGAGGTGGTA 84087 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || || || ||||| || || | || || ||| | | Sbjct 84088 TGCAAATCTTTGTTAAGACCTTGACCGGTAAAACTATCACATTAGAAGTTGAAGGTTCTG 84147 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || | ||||| ||| ||||||||| || |||||||| |||| Sbjct 84148 ACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAAC 84207 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| ||||||||||| || ||| | || | | |||||||| | Sbjct 84208 AAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGCCGTACCCTCTCTGATTATAACA 84267 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| |||||||||| | || | ||||| |||| Sbjct 84268 TCCAAAAGGAATCAACTCTCCATTTAGTTCTCAGACTCAGAGGTGGTA 84315 >seq982 Length=41121 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || || || || |||||||| || | || || ||| | | Sbjct 2821 TGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAAGGTTCTG 2762 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || | || || ||| |||||||| || ||||| ||||||| Sbjct 2761 ACACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAAC 2702 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || |||||||||||||| ||| | | || ||| | || || || | Sbjct 2701 AAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGACTACAACA 2642 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| |||||||||| | || | ||||| |||| Sbjct 2641 TCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGAGGTGGTA 2594 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || || || ||||| || || | || |||||| | | Sbjct 2137 TGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCAG 2078 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || | || || ||| |||||||| || ||||||||||||| Sbjct 2077 ACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAAC 2018 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || ||||||||||| || ||| | | || | | ||||| || | Sbjct 2017 AAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAACA 1958 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | ||||||||||| ||| |||||||||| | || | ||||| || || |||| Sbjct 1957 TCCAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAACTAAA 1904 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || || || || |||||||| || | || || ||| | | Sbjct 2365 TGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTCGAAGGTTCTG 2306 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || || | || || ||| |||||||| || |||||||| |||| Sbjct 2305 ACACCATCGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAAC 2246 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| ||||||||||| || ||| | | || ||| | || || || | Sbjct 2245 AAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAACA 2186 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || ||||||| ||| | |||||||||| |||| Sbjct 2185 TCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGGTA 2138 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || || || ||||| || || | || || ||| | | Sbjct 2593 TGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCTG 2534 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || | || || ||| |||||||| || ||||||||||||| Sbjct 2533 ACACCATTGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAAC 2474 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || ||||||||||| || ||| | | || ||| | || || || | Sbjct 2473 AAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAACA 2414 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||| ||||| || ||||||| ||| Sbjct 2413 TTCAAAAGGAATCAACCCTCCATTTGGTA 2385 >seq391 Length=66319 Score = 123 bits (136), Expect = 4e-23 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 146051 ATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAACGATACTATTCAAAATGTAA 146109 || || ||| || || |||||| | || ||||| || | || || || |||| || | Sbjct 37416 ATCAATAGGTAAGACGATTACTCTCGAAGTAGAGGGATCA-GACACCATCGAAAACGTCA 37358 Query 146110 AAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAG 146169 | |||||| ||| |||||||| || || ||||||||||||||||| || ||||| | Sbjct 37357 AGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTG 37298 Query 146170 GTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTA 146229 ||||||||||||| ||| | | || ||| |||||| || || ||||| ||||| || Sbjct 37297 GTAAACAATTAGAAGATGGTCGTACTTTACAAGATTACAACATCCAAAAGGAATCAACCC 37238 Query 146230 TCCATTTAGT 146239 |||||||||| Sbjct 37237 TCCATTTAGT 37228 >seq339 Length=35222 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| || || |||||||||||| | | |||||||| ||||| ||||| || || | | Sbjct 21035 AGGTATCCCCCCCGATCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTCG 21094 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 || ||| |||||||||||| ||||| |||||||| |||||||||| | || | || Sbjct 21095 TACTTTACAAGATTATAATATCCAAAAGGAATCGACCCTCCATTTAGTCCTCAGACTTAG 21154 Query 146252 AGGAGGTA 146259 ||| |||| Sbjct 21155 AGGTGGTA 21162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786090004280080