Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq540 159 3e-34 seq322 158 9e-34 seq982 143 2e-29 seq391 104 2e-17 seq339 89.7 4e-13 >seq540 Length=89862 Score = 159 bits (176), Expect = 3e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || || ||||| ||||| ||||||||||| | | ||| ||| ||| Sbjct 83842 AGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGACCATCT 83783 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || | |||||| || || || || ||||| ||||| ||| Sbjct 83782 TCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCT 83723 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | |||| || |||||| |||| | ||||||||| ||| ||||| | || ||||| Sbjct 83722 TGGA-TTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGT 83664 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 ||| || ||||| || || ||||| || |||||||||||| Sbjct 83663 TTTTCCGGTTAAAGTCTTTACAAAAATTTGCATTTTAAAA 83624 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | ||| || || ||||||||||| ||||| ||||| | | ||| ||| ||| Sbjct 84526 AGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCT 84467 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || | |||||| ||||| || || ||||| ||||| ||| Sbjct 84466 TCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCT 84407 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | |||| || |||||| |||| | ||||||||| ||| ||||| | || || || Sbjct 84406 TGGA-TTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATGGT 84348 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || |||||||||||||| || ||||| Sbjct 84347 TTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || |||||||| || ||||||||||| ||||||||||| | | ||| ||| ||| Sbjct 84070 AGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTACGACCATCT 84011 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || | |||||| ||||| || || ||||| ||||| ||| Sbjct 84010 TCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCT 83951 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | | || || ||||| |||| | |||||||| || ||||| | || || || Sbjct 83950 TGGA-TCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAATGTGATTGT 83892 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || |||||||||||||| || ||||| Sbjct 83891 TTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||| ||||| ||||||||||| | | ||| || ||| Sbjct 84298 AGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGGCCATCT 84239 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || | |||||| || || || || ||||| ||||| ||| Sbjct 84238 TCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCT 84179 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||||| || |||||| |||| | ||||||||| ||| ||||| | || ||||| Sbjct 84178 TG-GATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGT 84120 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||| |||||||| || ||||| Sbjct 84119 TTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 >seq322 Length=112280 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || ||||| || || |||||||| || ||||||||||| ||||| || || | Sbjct 11231 CCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11172 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | |||||| |||||| | || | |||||| || || || || Sbjct 11171 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGG 11112 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| ||||| || |||||| |||| | || |||||| ||| || Sbjct 11111 ATACCTTCTTTGTCTTG-GATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAAC 11053 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | || |||||||| || || ||||| || ||||| || |||||| Sbjct 11052 TTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATT 11004 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || || ||||||||||| ||||| || || | | || ||| ||| Sbjct 11900 AGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCT 11841 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| |||||| | || | |||||| ||||| || || ||||| ||||||||| Sbjct 11840 TCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 11781 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||||| || ||||| |||| | || |||||| ||||||||| | || || || Sbjct 11780 TG-GATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTACTTCCAAGGTGATTGT 11722 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||| || ||||| || ||||| Sbjct 11721 TTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||||||||| ||||| || || | | || ||| ||| Sbjct 11444 AGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCT 11385 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| |||||| | || | |||||| ||||| || || ||||| ||||||||| Sbjct 11384 TCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 11325 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| ||| || |||| | ||||||||| ||| ||||| | || |||||| Sbjct 11324 TGGATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTT 11265 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || ||||| || ||||| Sbjct 11264 TTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||||||||| ||||| || || | | ||| ||| ||| Sbjct 12128 AGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCT 12069 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| || |||||| | || | |||||| ||||| || || ||||| || || ||| Sbjct 12068 TCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCT 12009 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || || |||||| |||| | |||||||| ||| ||||| | || ||||| Sbjct 12008 TG-GATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAAGGTAATAGT 11950 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||| || ||||| || ||||| Sbjct 11949 TTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||||||||| ||||| || || | | ||| ||| || Sbjct 11672 AGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCT 11613 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| |||||| | || | |||||| || || || || ||||| ||||||||| Sbjct 11612 TCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCT 11553 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || || || ||| | || | || |||||| ||| ||||| | || ||||| Sbjct 11552 TG-GATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGT 11494 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||| || ||||| || ||||| Sbjct 11493 TTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 >seq982 Length=41121 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || || ||||| ||||||||||| || || | | || ||| ||| Sbjct 2383 AGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAAAGTACGACCATCT 2442 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| ||||| | || | |||||| ||||| || || ||||| ||||||||| Sbjct 2443 TCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 2502 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || || |||||| |||| | ||||||||| ||| ||||| | || ||||| Sbjct 2503 TG-GATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATAGT 2561 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||| || ||||| || ||||| Sbjct 2562 TTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Score = 138 bits (152), Expect = 9e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||||||||| ||||| ||||| | | ||| ||| ||| Sbjct 1927 AGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCT 1986 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| ||||| | || | |||||| ||||| || || ||||| ||||||||| Sbjct 1987 TCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 2046 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || || ||||| |||| | ||||| ||| |||||| || | || ||||| Sbjct 2047 TG-GATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGTGATAGT 2105 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||| || ||||| || ||||| Sbjct 2106 TTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 136 bits (150), Expect = 3e-27 Identities = 164/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||||||||| ||||| || || | | || ||| ||| Sbjct 2611 AGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCT 2670 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | || | |||||| ||||| || || ||||| ||||||||| Sbjct 2671 TCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCTTTGTCT 2730 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || || |||||| |||| | ||||||||| ||| ||||| | || || || Sbjct 2731 TG-AATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATTGT 2789 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT-TTTAA 29791 ||| || || ||||| || ||||| || ||||| ||||| Sbjct 2790 TTTACCGGTCAAGGTCTTTACAAAAATTTGCATGTTTAA 2828 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || || ||||| ||||| ||||| || || | | || ||| ||| Sbjct 2155 AGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCT 2214 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || ||| | || | |||||| || || || || ||||| ||||||||| Sbjct 2215 TCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCT 2274 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || || ||||| |||| | ||||||||| ||| ||||| | || || || Sbjct 2275 TG-GATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCCAAGGTGATTGT 2333 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||| || ||||| || ||||| Sbjct 2334 TTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 >seq391 Length=66319 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || ||||| ||||| ||||| ||||| | || ||| ||| Sbjct 37225 AGAACTAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTTGTAAAGTACGACCATCT 37284 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| |||||| | || | |||||| ||||| || || ||||| ||||||||| Sbjct 37285 TCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCT 37344 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| ||||| |||| | ||||| || |||||||| ||||| || || Sbjct 37345 TGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATCCCTCTACTTCGAGAGTAATCGTC 37404 Query 29755 TTGCC 29759 || || Sbjct 37405 TTACC 37409 >seq339 Length=35222 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| |||||| |||| | ||||||||| ||||||| Sbjct 20951 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATGGTGTCAGAACCTTCTACT 20892 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| || |||||||||||||| || || ||||| Sbjct 20891 TCTAAGGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTGCAT 20845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385182702166134