Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq7157 217 4e-52 seq915 203 9e-48 seq1335 150 5e-32 seq4209 113 1e-20 seq3563 109 2e-19 >seq7157 Length=721 Score = 217 bits (240), Expect = 4e-52 Identities = 235/307 (77%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 30085 GTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGT 30144 |||||||| |||||| || |||||||| | | ||||| | || |||| || || Sbjct 88 GTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC---CACTCGCGGGT 144 Query 30145 TCTGAGTGAACCCTCGACGTA-CAGTTGCTGACCCTTCTTTACG-TGCTGCCCGACGATC 30202 | ||| | || |||||||| || | ||| ||||| | | | || || |||| Sbjct 145 GCGGAGAGTGCCTTCGACGTAGCACTGGCT--CCCTTTTCGCAGATACTCACCCGCGATT 202 Query 30203 TCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCG 30262 || || | ||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||| Sbjct 203 TCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTGCTGCTGGCCG 262 Query 30263 GTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCG 30322 |||||||| || |||||||| ||||||||||| ||||| ||||| || || || |||||| Sbjct 263 GTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTACGGCGTTGCCG 322 Query 30323 TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTA 30382 || || | ||||| ||||||||| || ||| ||||||| || ||||| |||||||| Sbjct 323 TTCGGGGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAATCACTTTGTTG 382 Query 30383 ACGCCTC 30389 ||||||| Sbjct 383 ACGCCTC 389 >seq915 Length=38681 Score = 203 bits (224), Expect = 9e-48 Identities = 501/746 (67%), Gaps = 18/746 (2%) Strand=Plus/Plus Query 1072 TGGGAGGTTGCAGAAGGTGGCCTAACTGACGGTGAGCC----ATT--CTGGTTCGTGTTC 1125 ||||| ||||| ||||||| || || |||| || | ||| |||| | | ||| Sbjct 13182 TGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTATCTGGGTGGCGTTT 13241 Query 1126 GGGAACCCCACAAGGAACACAGGTCGATTCCGGGAGTGCTGGCGTAAGTTCCGCCATCGC 1185 |||||||| || | ||||| || || ||||| || |||| || |||| | || ||| Sbjct 13242 GGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCAAGTACAAGCACCGC 13301 Query 1186 TGGAAGACCAGGCAGATCGATAGTCG-ATCGGCCAAGATGACCAACAAAGACCTAATCAA 1244 |||||| | |||||| || || || | || ||| || ||||| | | | | Sbjct 13302 TGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGC-ACAAACAAGCAGCAGCTGCA 13360 Query 1245 GCAATGGGCCGCGGACTACGGCGAAGACTCCGACTTCTTCAAGGTACGTGTTCGCGGTCT 1304 | |||||| | ||||||||||||||| ||||||| | ||||| || || || || | Sbjct 13361 GAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCCGCGTGCGGGGGAT 13420 Query 1305 GTTCCCCTCGTCCTCTGATCTGCAATTCATCGGCACTGGCCTGGTCGATGCCGCAATGGC 1364 ||||| | || || || || || ||| || ||||| || | || ||| Sbjct 13421 CTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAGACGAGGCCATGAA 13480 Query 1365 ACGCGTCGTGACTGAGGCGATGGTAAGCCACGCGCCAGTTGTTATCGGCGTTGACCCGTC 1424 || || || || | | | ||| ||||| || || |||||||||| |||||| | Sbjct 13481 GCGGGTGGTTACCGCCGGGCAGGTTGCTCACGCTCCTGTGATTATCGGCGTCGACCCGGC 13540 Query 1425 GTGGTCAGGCGATGACGAATTTGCGATCTATATGCGGCAGGGGCTGCATAGCAAGCTGAT 1484 || || || | ||| || | ||| || |||||||||||||||| ||||| || | Sbjct 13541 GTATTCCGGAGTTGATGACGCGGTGATATACCTGCGGCAGGGGCTGCACAGCAAAGTGCT 13600 Query 1485 CGCAACTCACCAGAAGTCTGATGACGACGTTCTGATGGCTCAGCGTATTGCCCAGCTGGA 1544 | || | | ||| | ||||| | | |||||| |||| || ||| | | || Sbjct 13601 CTGGACCGGCAACAAGACCACCGACGATTTGATTATGGCTAAGCGAATCGCCGACTTTGA 13660 Query 1545 AGACCAGTACAAGGCCGACGCGGTATTCGTCGACTTTGGCTATGGCACAGGCAT--TGT- 1601 |||||||||| |||| |||||||| ||| ||||||| || || ||||| || | || Sbjct 13661 AGACCAGTACCAGGCTGACGCGGTGTTCATCGACTTCGGTTACGGCACCGGGCTGAAGTC 13720 Query 1602 CAGCGCGGCTCGAGCAATGGGGC-GCAACTGGACGCTTGTGCAGTTCGGGGGTGCCTCAA 1660 || || | || || |||||| | | ||| ||| | | |||||| || | ||| | Sbjct 13721 CATCG-GTGACG-GC--TGGGGCAGGACATGGCAGCTAATCCCGTTCGGCGGCGGCTCGA 13776 Query 1661 GCGATCCGGCAATGCTGAACAAGCGTGGCGAGATCTGGAACGCGATG-AAGGAATGGCTC 1719 |||||| ||||| || ||||| || ||||| | ||| | || ||| ||||| Sbjct 13777 CCGATCCCCAGATGCTAAATAAGCGCGGAGAGATGTTCAAC-AGCTGCAAGACGTGGCTG 13835 Query 1720 AAGGCTGGCGGCGAACTGAACGACCAGCAGACCGCAGACGAGATCTCGGCGCCTGAGTAT 1779 ||| ||||||| ||| |||||||| |||| || | || | || ||| | ||||| Sbjct 13836 AAGCTAGGCGGCGCGCTGGACGACCAGGAGACGGCTAATGACCTGTCTGCGGCAGAGTAC 13895 Query 1780 CGCGTCAAGCTCGACGGCAAGATCGT 1805 |||| | | |||||||||||||| Sbjct 13896 AAAGTCAGGGTGGACGGCAAGATCGT 13921 Score = 93.3 bits (102), Expect = 1e-14 Identities = 200/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 4937 GATTGCTGAGCTGCTGTCCCAAGAAAACGAGATGCTGCTGGACATGCCCTG-GTACGAGG 4995 ||||| || || || ||||| |||||| || ||| ||||||| | ||| |||| Sbjct 18339 GATTGTCGAACTCCTTTCCCAGACAAACGAAATCCTGACGGACATGATGTTCGTA-GAGG 18397 Query 4996 GCAACCTGCCCACCGGTTCGCGCATCACCACCCGCACCGGCCTGCCGGATGTGATCTACC 5055 |||||||||| || || |||| ||| || | || |||| || || | | Sbjct 18398 GCAACCTGCCAACAGGGCACCGCACCACTGTGCGATCTGGTTTGCCATCTGCGACATGGC 18457 Query 5056 GCAAGCTGAACAGTGGTGTGCCGCCGAGCAAATCGACCACCGCGCAAGTCGACGAGGCAT 5115 || ||||||| ||||||| ||| |||||||| ||||||| || || || | | Sbjct 18458 GCTTGCTGAACTACGGTGTGCAGCCAAGCAAATCAACCACCGTACAGGTTACAGACTCCT 18517 Query 5116 GCGGCATCCTCGAAGCTCGCGGTCAGGTTGACGTGGACTTGGC-GATGCTGAATGGCAAC 5174 |||| || || ||| | | | ||||||| | |||| ||| ||||| ||||| Sbjct 18518 GCGGGATGCTGGAAACCTATGCTGAGGTTGATAAGTCTCTGGCTGAT-CTGAACGGCAAT 18576 Query 5175 ACCGCAGGTTTCCGCCTGTCTGAGTCGCGTGCATTCATGGAAGCAATGAACCAG 5228 || || | ||||| ||||| || ||||||||||| |||| ||||||||| Sbjct 18577 ACTGCTGAATTCCGTCTGTCGGAAGACCGTGCATTCATCGAAGGTATGAACCAG 18630 >seq1335 Length=14169 Score = 150 bits (166), Expect = 5e-32 Identities = 300/447 (67%), Gaps = 42/447 (9%) Strand=Plus/Minus Query 31234 TTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGCCGGCGAACCCGAACGCGAGGCG 31293 ||| || || |||||||| || |||| ||| || || || || || ||||| || || || Sbjct 8293 TTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACG 8234 Query 31294 TGCGCACTGGATCATTGCCTTGTGGCGAAGCATCCGGCGCGGATGGGACTGCCAAGGCTG 31353 || ||||| ||||| || || || || | |||||| ||||| |||||||| || Sbjct 8233 GGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGTCC 8174 Query 31354 GGTG--TTC--------CGC-------------TT-------GCACTCGGCCATGTACTC 31383 |||| ||| ||| || ||| || |||| |||| Sbjct 8173 GGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACTC 8114 Query 31384 AGTCGCGCTGATGGCATGGCTGCGGTCCTTCCGATAGATCTTGCAGGTGCA---TTCGGT 31440 || ||| ||| | ||| |||||||||| || || ||| ||| ||||| ||| | Sbjct 8113 GGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCATT 8054 Query 31441 TCCCTGCTGGTCCATTGAGAATTCCATGCCATCGAACTGTGGGTTCTCGTTGATGATCCG 31500 |||||| || || ||||| ||||| ||||| |||| || |||||||| || Sbjct 8053 GTCCTGCT----CA-----AAGTCCATACCATCAAACTGCTGGTTTTCATTGATGATGCG 8003 Query 31501 AGCCCAGCCATCCACGCCAACAACTGGCACGATGCCGTTGTTCTTGTCGGGGAATGCGTA 31560 | ||||||||| ||||| || || || ||||||||||| | ||| || ||||| ||||| Sbjct 8002 GGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTA 7943 Query 31561 CAACTCCTTGGTGAAGGGGTTCAGTTTGTACTGGTCTGCCACGATCAGCAGGGCGACCAT 31620 | || || || | || || || |||||||| || |||||||||| |||| | Sbjct 7942 AATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGATGAA 7883 Query 31621 CTGCGAATCATTGACCTGGCCCTTGAA 31647 ||||| ||| || | | ||| || || Sbjct 7882 CTGCGCATCGCTGGCATCGCCTTTAAA 7856 >seq4209 Length=1822 Score = 113 bits (124), Expect = 1e-20 Identities = 220/322 (68%), Gaps = 5/322 (2%) Strand=Plus/Plus Query 30067 CTGCAT-CTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCT 30125 |||||| |||||| |||||||||||||| || || || ||||| || | |||||| | Sbjct 339 CTGCATTCTGCCC-TGCATGTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTT 397 Query 30126 GCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTGACCCTTCTTTA 30185 || |||| ||| ||| || ||| |||| ||| | ||| || ||| | Sbjct 398 TTTCC---CACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCA 454 Query 30186 CGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGC 30245 | || || |||| || || | ||||| || || || |||||||||||||| Sbjct 455 GATACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCT 514 Query 30246 GCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGT 30305 || || ||| || || |||||||| |||| ||| || || || ||| ||| | Sbjct 515 TTTCGACTTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGAT 574 Query 30306 TGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAA 30365 |||| || ||||| ||||| || | ||||||||||| || || ||| | |||||| Sbjct 575 TGGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAA 634 Query 30366 CCAGAATGACTTTGTTAACGCC 30387 ||| || ||||| || ||||| Sbjct 635 CCAAGATCACTTTATTTACGCC 656 >seq3563 Length=1830 Score = 109 bits (120), Expect = 2e-19 Identities = 226/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | || ||||| || ||||||||||| | ||| || || ||||| || | Sbjct 1420 CCGCCCAGCAGTTGCATGGTGCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCT-- 1363 Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCT 30173 ||| ||||| | || |||| || ||| || || |||| ||| | ||| Sbjct 1362 TGATGCCGTCTTTTTCC---CACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCG 1306 Query 30174 GACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGT 30233 ||| || | || | ||| ||||||| || | ||| ||||| | | ||| |||| Sbjct 1305 AACCTTTGCGCAGGTATTCACCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGT 1246 Query 30234 GCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGG 30293 |||||||||| ||| | ||||||||| |||||||| |||| |||||||| | Sbjct 1245 GCCATTCGGTTTTCTCGACCTTCTGGCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCG 1186 Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCAC 30353 | || | | ||||||||| || || ||||| |||| |||||| ||| || || | Sbjct 1185 CCAGACTCAGGTTGGTCACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGC 1126 Query 30354 CGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 || | || |||| |||||||||||||| || Sbjct 1125 CGCATGTACCGACCAATATGACTTTGTTAACCCC 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145624955209056