Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq1445 385 1e-102 >seq1445 Length=14432 Score = 385 bits (426), Expect = 1e-102 Identities = 950/1430 (66%), Gaps = 56/1430 (4%) Strand=Plus/Plus Query 1836 AGCTCGAAGACGTCGAAGCGGATCACTTCCTGCCCCAGCCACTCGTTGATCGCGGTCATG 1895 ||||| || | | ||| | || || || | |||||||||||||||| | || || Sbjct 11779 AGCTCAAACTCCTTGAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGCCAGC 11838 Query 1896 CGCGTCTGCAGCGGGGCAAGCTCCATCGCCGCCCACACCGCCGCTGCGTCCCGGATCGAG 1955 | || ||||| ||| | ||||| | ||||||| ||| | || || ||||| | ||| Sbjct 11839 CTCGCCTGCAACGGCTCCAGCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGAC 11898 Query 1956 CCAAAGCCGCCGCTGTTCTGGGGCACGATGCCCAGCAGCTGCGGCGGTACCCGTAACGCG 2015 ||||| ||||| |||||| ||||||||||||| || |||||| || | || ||||| Sbjct 11899 CCAAAACCGCCCGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCC 11958 Query 2016 GCCAGCATGTCATCGCGGGTCACGCTCTTGATGCCGGTGAATTCATCCCTTGCCGCCACC 2075 || |||| || || ||| | | | | ||||| | ||||||| ||| | ||||| ||| Sbjct 11959 GCGAGCAGATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACC 12018 Query 2076 TCACTGACCGGGATCACCTGCAGGCCGTCCTTCTTCCCGTTGGGCGAGTGAACGAACAGG 2135 || || |||||||| | ||| | |||||| ||||| || |||| || || |||||| Sbjct 12019 TCGCTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGG 12078 Query 2136 TTCTTGAAATTGCCCGGCCCGCGCGACTGCCGCAGTGCGTCGCGTAACGCATCCACGTCC 2195 || || ||||| ||||| ||| | | ||||||| ||| | | || | |||| Sbjct 12079 TTGCGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCC 12138 Query 2196 A-TGCCCTCGGGTTGGGGATCGGTCATGTAGAGGATGTAGCCGGCGTGCGAACCGTTGTT 2254 | || || | | | ||||||||||| || ||| | ||||| || |||||||| Sbjct 12139 TCTTCCTTCTGCGCCGCG-TCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTT 12197 Query 2255 GTAATACTTCCGGCGGAAAAGCGTGGCCGACTCATTCAGCAACGCGGCCTGTACGGCTGG 2314 ||| ||||| || ||||| |||||||| ||| || |||| ||| || | |||| Sbjct 12198 GTAGTACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGCGCTTTGCAGCGCTGC 12257 Query 2315 CATCCATTCCGGCAGGCCGTAGATTTCCTGATCCGCGTCCGCCTCGCGCAGCTGGAACAC 2374 || ||| ||||||||||||||||||||||| | || |||||||||| ||| | | Sbjct 12258 CAGCCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGAT 12317 Query 2375 CTCACCAGCGGGAAACTCATGCTCTACCCGTCCGGCNNNNNNNNNNNNNNNNNNNNNGGG 2434 | ||| | || ||| ||||| || || | | | Sbjct 12318 CGAACCGGGGGCAAATTCATGTTCGTCCTTCCAGCCACGCACCTGGTAATAGGTCTCCAT 12377 Query 2435 CTGCACGCCACGGCGCACGTACTGCGCCAGCGGCACC-GCAAGACTGTGCGCGGCTCCTG 2493 | ||| || ||||||| ||||| |||||| || | ||| | | || | | | | Sbjct 12378 GTCCACACCCCGGCGCATGTACTTCGCCAGTGGAGGCAGCAGGCCCATGGT--GTTGCGG 12435 Query 2494 A-CATAGCGCGGCGACGCTCGACATACCCCATGCCGAAGGTGGTGTAGTCCAGCGCCAGC 2552 | ||| | ||| || | || | |||| | | ||||||| || | | Sbjct 12436 AGCATGTTGTTGCGCTTTTCCAGGTAGCAGTTGCCACACCAGAGCCAGTCCAGGGCGAAC 12495 Query 2553 TGCGAGAACGCCTCGCGGCCCAGCAGCCGGTGCGGTCGGAACGTGCGCACCAGCATGTTG 2612 ||| || || | ||| | || ||||||||| || ||||||||| | ||||||||| Sbjct 12496 TGCTCAAAGGCTTGGCGACTCAACAGCCGGTGGGGAACGAACGTGCGGGCAAGCATGTTG 12555 Query 2613 CGTTTGAATGTCAGGCCGCTGTGCAGGTACGGGTTGGAGCGCGTGGTGCGCGACAGCCCT 2672 || ||||| |||| ||| || |||||| | ||| || || || || ||| || Sbjct 12556 CGCTTGAAGTTCAGCCCG-ACTGGAGGTACACGCTGGCCCGGGTCGTTTTCGCCAGGCCG 12614 Query 2673 TGCAGATCGAC--CGGCGGCTCGAAGTAGCGGCCATTGCGCCAGCATTCGAGGTAGTCGA 2730 | | || ||| ||| | || || | ||||||||| |||||| || |||||||||| Sbjct 12615 TCC--ATGGACATCGGTGTTTCAAACCAACGGCCATTGGCCCAGCACTCCAGGTAGTCGA 12672 Query 2731 GGAAACCGCGCGATTCCAGCACAGGGCTGGGCCTCGCCAAAGGTGAAGGCCTCGA----- 2785 ||| | || |||| ||| ||| || || || || ||||| || || | Sbjct 12673 GGATCTCCCGGCTATCCAACAC-GGGAGCGGGATCACCGAAAGTGAACGCTTCAACCGGC 12731 Query 2786 ---TACTCA-CCGGCGGC-------------------GC-GGGCCATGGCGCCCTGG--T 2819 ||||| |||| || || | || |||| |||| | Sbjct 12732 CCGGACTCAGGCGGCAGCAAATCCCCTTCAACGGGTGGCTGAGCGGTGGCCAGCTGGGTT 12791 Query 2820 CGG------TGTC-GGTCATCAGAATATCTTCCAT-GGTGCCGCGCGCAGCCTG-TCCGC 2870 | | ||| | ||||||| | | ||||| | | | | | | || || || Sbjct 12792 CCGCGCTTACGTCTGCTCATCAGTAGGAC-TCCATAAATCCGGTGTTCGCCGTGGTCTGC 12850 Query 2871 CTTCCCAGCGGCTCGTTCTGCAGCGCGTGCATGAGTGCCCAGGGCCAAGTCAGCATGGCC 2930 | | | || || ||||| ||||||||||| | || ||||| || | ||| |||||||| Sbjct 12851 CCTTCAAGGGGTTCGTTGTGCAGCGCGTGGAACAGCGCCCA-CGCTAGGTCGGCATGGCC 12909 Query 2931 CGGTGGTGCGCGAGCGTCCGGGCGGTGTAGGTCACCTGGCGCCCGCTCGGGGTGATGGTT 2990 | || | | ||| || ||| ||||| || | | ||||||| | |||||| ||| Sbjct 12910 C-GTCTCGTCTGTGCGACC-GGCCGTGTAAGTGAACATGCGCCCGGAGGCGGTGATTGTT 12967 Query 2991 TTCTGGATCGCCAGCAGTGACTGCGTGAGGTCGGTCCAGCCGGCGTCGTACTCCAGCCGT 3050 || |||| |||| || |||||||| | || |||||||| || ||| ||||||||| Sbjct 12968 TTGCGGATAGCCATCAATGACTGCGCCATATCCGTCCAGCCCGCATCGAACTCCAGCCTG 13027 Query 3051 TCGTCATTGATTACGTCGTAGGCTTTCAGCACCAGCCGCGTTTTCACCTCGGGCGAGTAG 3110 ||| ||||| |||||||| || ||||||||||| || ||||| || ||||| |||||| Sbjct 13028 CCGTTTTTGATGACGTCGTAAGCCTTCAGCACCAGGCGGGTTTTGACTTCGGGTGAGTAG 13087 Query 3111 TTGAAGACGGTCACGCCGGGGAAGAACTGGCGCACCAGCTGTGCAACGCCGGTGCCCATG 3170 |||| ||| | | ||||||||||| ||||||||| || ||||||| ||| || Sbjct 13088 CTGAACGTGGTGATGTTCGGGAAGAACTGCTTCACCAGCTGCGCCACGCCGGAACCCGTG 13147 Query 3171 CCGGTCGCATCCACGCCGATGTAGGTCACCCAATAGCGCTTGGTGATCTG 3220 ||||| ||| | ||||||||||||||||| ||||| ||| || ||| Sbjct 13148 CCGGTGATATCGATCCCGATGTAGGTCACCCAGTAGCGTCTGGAGACCTG 13197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107148507538356