Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq5077 116 5e-21 >seq5077 Length=2402 Score = 116 bits (128), Expect = 5e-21 Identities = 227/325 (70%), Gaps = 13/325 (4%) Strand=Plus/Minus Query 99860 CCAAAACCACCTGCGCCGCGTTCAGTTTCCGTACTGAACTCATCCACCTGTTTGAACAGA 99919 || || |||||||||||||||| ||||| || |||||| || ||| | | ||| | Sbjct 971 CCGAAGCCACCTGCGCCGCGTTGTGTTTC-GTC--GAACTCTTCGACCAGCTCGAAGTGC 915 Query 99920 CCCATCACCACCGGTTGAATCAGGTATTGCGCAATACGGTCGCC-ACGAGAGATTTTAAA 99978 || |||||||||| | || | ||| ||||| || ||||| ||| | ||| || || Sbjct 914 GCCTGCACCACCGGTACCAGCACGAGTTGGGCAATGCGCTCGCCGACG-GCGATATTGAA 856 Query 99979 CGCAGGTCCCTGAGTGTTACGGTTCCA-CAGTGAAACCATCAGCTGCCCGTTGTAGTCTG 100037 ||| |||| || | ||||||||| ||| || ||||||| || || | |||||| | Sbjct 855 CGC-GGTC--TG---GCCACGGTTCCAGCAG-GACACCATCAACTCGCCCTGGTAGTCCG 803 Query 100038 CATCAATGACGCCCGTCAGGTTACCCAGTACGATACCGTGTTTGTGACCCAGACCGGAGC 100097 || || | ||| |||||| || || ||||| ||||||||||| ||||| ||||||| Sbjct 802 AGTCGATCAGCCCCACCAGGTTGCCGAGGACGATGCCGTGTTTGTGGCCCAGGCCGGAGC 743 Query 100098 GAGGGTGAATCAATCCCACGTAGTTTGGATTCTTCAGGAAGAATGCCAGACCGGTTGGAA 100157 | || | |||| || | | || | || | ||| | ||| ||||| |||| Sbjct 742 GCGGCAGGATCAGCGCCGCCAGGCCCGGGTCGCCCACGTAGATCGACAGGCCGGTCGGAA 683 Query 100158 TCAGTTTTGTTTCGCCAGGTTCGAG 100182 |||| | || | ||| ||||| || Sbjct 682 TCAGAATGGTCTGGCCTGGTTCAAG 658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698488917742960