Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq322 113 4e-20 seq1819 104 2e-17 seq982 100 3e-16 seq540 91.5 1e-13 seq391 91.5 1e-13 >seq322 Length=112280 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| |||||| | |||||||||| |||||||||||||| |||||||| || Sbjct 11231 CCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11172 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | ||||||||||||| | || || | ||| || ||||| || Sbjct 11171 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGG 11112 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| || | | ||| | || || | ||| ||| Sbjct 11111 ATACCTTCTTTGTCTTGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAACT 11052 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || |||||||| || ||||| || |||||||| Sbjct 11051 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11005 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||| | || ||||||||||| |||||||| ||| | || | ||||| Sbjct 11441 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCC 11382 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||||||||||||| | || || | ||| |||||||| || || ||||||||||| | Sbjct 11381 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTC-TTG 11323 Query 137323 ATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 |||| |||||| | | ||| | ||||| | ||| ||||| | || | || || Sbjct 11322 GATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTTTT 11263 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||||||| || || || || ||||||||| || Sbjct 11262 ACCGGTCAAGGTCTTGACAAAAATTTGCATACCT 11229 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | | || ||||| | ||| ||||||||||| |||||||| || Sbjct 11915 CCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAG 11856 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | ||||||||||||| | || || | ||| |||||||| || Sbjct 11855 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 11796 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| || | | ||| | || || | ||||||| Sbjct 11795 ATACCTTCTTTGTCTTGGATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTACT 11736 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || || |||||||| || ||||| || ||||||||| Sbjct 11735 TCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATA 11688 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||||||||| | |||||||||||||| |||||||| || | || | |||||| Sbjct 11670 AACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCTTC 11611 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | ||||||||||||| | || || | ||| || ||||| || || ||||||||||| Sbjct 11610 TAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 11551 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || |||| | || | || || | ||| ||||| | || | || || Sbjct 11550 GATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGTTTT 11491 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||||||| || ||||| || ||||||||| Sbjct 11490 ACCGGTCAAGGTCTTTACAAAGATTTGCATA 11460 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||| | || ||||||||||| |||||||| || | || | ||||| Sbjct 12125 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCTTCC 12066 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||| ||||||||| | || || | ||| |||||||| || || ||||| || || Sbjct 12065 AATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGG 12006 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || || | | ||| | ||||| | | ||| ||||| | || | || || Sbjct 12005 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAAGGTAATAGTTTTA 11946 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||||||| || || || || ||||||||| Sbjct 11945 CCGGTCAAGGTCTTGACAAAAATTTGCATA 11916 >seq1819 Length=3716 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 50502 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50561 || || || || |||||||| || ||| | || || || || || || || || | || Sbjct 3675 GACGCGGTAGAAATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGG 3616 Query 50562 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50621 ||||| ||| | |||||| |||| |||||||||||||||||||||| | || | | Sbjct 3615 ATGAATGCAAAACTGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAA 3556 Query 50622 CTGGGACA-ACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATC 50680 ||||| | ||| ||||| ||| |||| || || ||| |||||| | | || || Sbjct 3555 CTGGGTTATACCAAAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTC 3497 Query 50681 GTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA-CAAAA 50730 || | |||||||| || || || || | |||||| || || || ||||| Sbjct 3496 CCTGCAAGGCAAAACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 3446 >seq982 Length=41121 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||| | |||||||||||||| ||||||||||| | || | ||||| Sbjct 1930 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCC 1989 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||||||||| | || || | ||| |||||||| || || ||||||||||| Sbjct 1990 AATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 2049 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || || | | ||| | ||||||| |||||| || | || | || || Sbjct 2050 ATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGTGATAGTTTTA 2109 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||||||| || || || || ||||||||| Sbjct 2110 CCGGTCAAGGTCTTGACAAAAATTTGCATA 2139 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||| | || ||||||||||| |||||||| ||| | || | ||||| Sbjct 2614 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCT 2673 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||||||||| || | || || | ||| ||||| || || || ||||||||||| | Sbjct 2674 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCTTTGTCTTGA 2733 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || || | | ||| | ||||| | ||| ||||| | || | || || Sbjct 2734 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATTGTTTTA 2793 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| || ||||| || |||||||| Sbjct 2794 CCGGTCAAGGTCTTTACAAAAATTTGCAT 2822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | | || ||||| | || ||||| ||||| |||||||| ||| Sbjct 2140 CCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGAT 2199 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | ||||||||| ||| |||| || | ||| || ||||| || Sbjct 2200 AAAGTACGACCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGG 2259 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || || | | ||| | ||||| | ||| ||| Sbjct 2260 ATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACT 2319 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || || |||||||| || ||||| || ||||||||| Sbjct 2320 TCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATA 2367 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||| | || ||||| ||||| |||||||| ||| | || | ||||| Sbjct 2386 ACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAAAGTACGACCATCTTCC 2445 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||||||||| | || || | ||| |||||||| || || ||||||||||| Sbjct 2446 AATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 2505 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || || | | ||| | ||||| | ||| ||||| | || | || || Sbjct 2506 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATAGTTTTA 2565 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||||||| || || || || ||||||||| Sbjct 2566 CCGGTCAAGGTCTTGACAAAAATTTGCATA 2595 >seq540 Length=89862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||||| || ||||||||||| ||||| ||||| | || | ||||| Sbjct 84067 ACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCC 84008 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||||||||| ||| | || || | ||| |||||||| || || |||||||| || Sbjct 84007 AATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGG 83948 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || || | | ||| | ||||| | | || ||||| | || | || || Sbjct 83947 ATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAATGTGATTGTTTTA 83888 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||||||| ||||| || || ||||||||| Sbjct 83887 CCGGTCAAGGTTTTAACAAAAATTTGCATA 83858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | | ||| | ||| | || ||||||||||| ||||||||||| Sbjct 84541 CCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAG 84482 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | ||||||||| ||| | || || | ||| |||||||| || Sbjct 84481 AGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGG 84422 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || ||||| || | | ||| | ||||| | ||| ||| Sbjct 84421 ATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 84362 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || || |||||||| ||||| || || ||||||||| Sbjct 84361 TCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCATA 84314 >seq391 Length=66319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||||||||| | || ||||| ||||| ||||||||||| | || | ||||| Sbjct 37227 AACTAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTTGTAAAGTACGACCATCTTC 37286 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | ||||||||||||| |||| || | ||| |||||||| || || ||||||||||| Sbjct 37287 TAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCTTG 37346 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||||| || | | ||| | ||||||| |||||||| | ||| | |||||| Sbjct 37347 GATTTTAGCCTTGACGTTTTCGATGGTGTCTGATCCCTCTACTTCGAGAGTAATCGTCTT 37406 Query 137382 GCC 137384 || Sbjct 37407 ACC 37409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488496525736800