Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023689.1 Length=76260 Score E Sequences producing significant alignments: (Bits) Value seq2068 244 5e-60 seq848 197 7e-46 seq6252 116 2e-21 >seq2068 Length=4790 Score = 244 bits (270), Expect = 5e-60 Identities = 454/664 (68%), Gaps = 7/664 (1%) Strand=Plus/Plus Query 66182 CCACCGGCTCTATCGCCCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66241 |||| |||||| | | |||||| ||| || ||||| || || || | ||||| Sbjct 4130 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 4189 Query 66242 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66301 | || || |||||||| || |||||||| || || | || ||| || | | | | Sbjct 4190 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 4249 Query 66302 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66361 || | || || || || | || | || | | |||| || |||||| ||||||| | Sbjct 4250 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 4309 Query 66362 CTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGA 66419 |||| |||||| ||| ||| || || || | ||| |||| |||| || ||||| Sbjct 4310 CTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGA 4367 Query 66420 CACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCAT 66479 ||| || ||||| || ||||| ||| ||| | || || || || | | | Sbjct 4368 CACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGT 4427 Query 66480 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66539 |||| || ||||| ||||| |||||||| || || || |||||||||| || || Sbjct 4428 GATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGG 4487 Query 66540 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66599 |||| ||||| ||||| || || ||| | ||||| |||||| |||| || ||||||| Sbjct 4488 CGACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGG 4547 Query 66600 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66659 | |||| | | ||||| || | ||| |||||||| | || ||||||||| Sbjct 4548 TAACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 4607 Query 66660 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 66719 | || | | ||||| || |||||||| || || || || ||| ||||||||| Sbjct 4608 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGGGGTAACGCGCTGAAGTTCTACGC 4664 Query 66720 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 66779 || ||||| |||| ||||||| | | | | | ||||||||| || |||| ||| || Sbjct 4665 TTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGG 4724 Query 66780 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 66839 | | ||||| || || ||||| ||||||||| ||||||||||| ||| | ||||| Sbjct 4725 TAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGA 4784 Query 66840 GTTC 66843 |||| Sbjct 4785 GTTC 4788 >seq848 Length=108724 Score = 197 bits (218), Expect = 7e-46 Identities = 404/598 (68%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 66229 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66288 |||| ||||| | || || || ||||| || ||| || || ||| |||| ||| Sbjct 34642 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 34701 Query 66289 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66348 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 34702 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 34761 Query 66349 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66408 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 34762 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 34821 Query 66409 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66468 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 34822 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 34881 Query 66469 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66526 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 34882 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 34939 Query 66527 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 66586 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 34940 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 34999 Query 66587 GCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 66646 ||||||| |||| |||| ||| | ||||| || | | |||||||| | | Sbjct 35000 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 35059 Query 66647 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTT 66706 || |||||||||| ||| | ||| || || ||||| ||||||||||| || Sbjct 35060 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 35116 Query 66707 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 66766 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 35117 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 35176 Query 66767 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66824 | |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 35177 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 35234 >seq6252 Length=969 Score = 116 bits (128), Expect = 2e-21 Identities = 189/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 66707 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 66766 ||| ||||||||| || ||||| |||| ||||||| | | | | | ||||||||| | Sbjct 959 TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTG 900 Query 66767 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGC 66826 | |||| ||| || | | ||||| || || ||||| ||||||||| ||||||||||| Sbjct 899 ACGAGGTTGTTGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGT 840 Query 66827 ACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCC 66886 ||| | ||||||||| | | ||||| |||| |||| | | | ||| | Sbjct 839 TCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGA 780 Query 66887 TCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACG 66943 ||||||||| |||| ||| || | || |||| || || ||||||| | | ||| Sbjct 779 TCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACG 720 Query 66944 GGGACAAGAACGTCGCTCAGGGCAAGCCCAA 66974 | ||||| ||| ||||||||| |||| Sbjct 719 GCAGCAAGA---TCGGCCAGGGCAAGGCCAA 692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243884090859894