Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq2128 228 3e-54 seq1 138 4e-27 seq454 86.0 2e-11 >seq2128 Length=6445 Score = 228 bits (252), Expect = 3e-54 Identities = 296/407 (73%), Gaps = 4/407 (1%) Strand=Plus/Plus Query 188785 ACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTA 188844 ||||| | || |||||| | || || | ||| | || | || |||||||| ||| | Sbjct 4540 ACTGGAACTGGCAAAACACTTTTGGCAAAGACAATTGCAAAAATATTACATGTTCCTTTT 4599 Query 188845 GCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAAC 188904 ||| | |||||| || ||||||||| || |||||||| |||||||||||||||| Sbjct 4600 TGTATTTGTGATGCTACAGTTTTAACAGAGGCAGGTTATGTTGGTGAAGATGTGGAAA-- 4657 Query 188905 GTAT--TGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAA 188962 |||| | |||||| | || || || ||||| ||| | | | || |||||||||| Sbjct 4658 GTATCCTAACCCGTTTACTGCAGGCGGCCGATTATGATGTGGCTTCTGCCGAACGTGGAA 4717 Query 188963 TTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCC 189022 |||| || |||||||| || |||||| |||| | ||| || | | || |||||| Sbjct 4718 TTGTTTACATCGATGAGGTTGATAAAGTTGCACGTAAAAGCGATAATCCTTCAATTACCA 4777 Query 189023 GAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTG 189082 | |||||||| || ||||| || |||||||| || | || ||| ||||||||||||| | Sbjct 4778 GGGATGTATCCGGAGAAGGTGTTCAGCAAGCGCTACTTAAGATCCTTGAAGGTACAGTGG 4837 Query 189083 CGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATA 189142 ||| || |||||||| || || ||||| || ||| | || ||||| || | ||| Sbjct 4838 TGAATGTCCCTCCTCAGGGCGGACGTAAGCATCCTGATCAGAAAATGATTCCTGTGAATA 4897 Query 189143 CAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAA 189189 ||| ||| || || |||||| ||| || || |||||||| ||||| Sbjct 4898 CAAATAACATTTTATTTATTTGTGGAGGTGCATTTGATGGGATTGAA 4944 >seq1 Length=177052 Score = 138 bits (152), Expect = 4e-27 Identities = 336/503 (67%), Gaps = 16/503 (3%) Strand=Plus/Plus Query 188632 TTAGATAATCATATTATTGGACAAGAAAAAGC-AAAACGTCAATTAGCTGTATCAGTTTA 188690 |||||| | || |||| |||||||| | || |||| | || || || || | ||||| Sbjct 138601 TTAGATCAGTATGTTATCGGACAAGACAGGGCCAAAAAGACACTT-GCCGTTGCTGTTTA 138659 Query 188691 TAATCATTATAAGCGCATTAATGCTCTTAATGaaa---aatcaaaaaatgatgatggagt 188747 |||||||||||| || |||| || || || | || || ||||| || Sbjct 138660 TAATCATTATAA-------AAGGCTC--AACCAACCTCAAGAAGAACGCGAGGATGGTGT 138710 Query 188748 aaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATT 188807 || ||||||||||| || | ||| | || || || |||| ||||||| || Sbjct 138711 GGTCATAGAAAAATCTAATATTTTATTAATAGGTGACACAGGAACAGGAAAAACATATTT 138770 Query 188808 TGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTT 188867 || | ||| | ||| | | | || || ||| | ||| | ||||| || || Sbjct 138771 AGCACGCACACTAGCTAACTTACTTCAAGTCCCTTTTTGTATGGCAGATGCCACCGTCTT 138830 Query 188868 AACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAA-ACGTATTGCTTCGTTTAATCCAAG 188926 ||| |||| || ||||| || || || || |||| | | || | ||| | | |||| Sbjct 138831 AACGCAAGCAGGCTATGTCGGCGAGGACGTAGAAACAATTCTTACA-CGTCTTTTACAAG 138889 Query 188927 CAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATA 188986 | |||||||| ||| | | || ||| | || || || || ||||||||| |||||| Sbjct 138890 CTGCTGATTATGATGTAGCTGCTGCCGAAAGAGGCATCGTCTACATCGATGAAATAGATA 138949 Query 188987 AAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTAC 189046 | |||||| | ||| ||| | | ||||||||||| |||||| || ||||| |||| Sbjct 138950 AGATTGCTCGCAAAGGAGACAATCCTTCCATTACCCGTGATGTAAGCGGTGAAGGGGTAC 139009 Query 189047 AGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTC 189106 ||||| |||| | ||| | | ||||| | ||| || || || || ||||| || | Sbjct 139010 AGCAATCTTTGCTCAAATTACTGGAAGGGTCCATTGTCAATGTCCCCCCACAAGGCGGAC 139069 Query 189107 GTAAACACCCTCACCAAGAAATG 189129 | || || ||| ||||| | ||| Sbjct 139070 GAAAGCATCCTGACCAAAAGATG 139092 >seq454 Length=51259 Score = 86.0 bits (94), Expect = 2e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 46578 ACAATTTTGTTTTTAGACGAAATACATCGTTTCAATAAAGGACAGCAAGATTCGTTATTA 46637 ||| || | ||| | || ||||| ||| | | |||||| ||| || ||| |||||| Sbjct 5212 ACAGTTATATTTGTTGATGAAATTCATAGATATAATAAATTACAACAGGATGTATTATTA 5271 Query 46638 CCTTATGTTGAAGATGGAACAATTACGTTAATTGGTGCAACAACTGAAAATCCATTTTTT 46697 || | || || ||||| ||||||| || ||||||||||| || || ||||||| |||| Sbjct 5272 CCATCGGTAGAGGATGGTACAATTATTTTGATTGGTGCAACTACAGAGAATCCATCTTTT 5331 Query 46698 GAAATTAACGGAGCTTTAATTTCTAGATCAACAATATTCAAGTTGGAACCATTAAGTAAA 46757 ||| | || | ||| | || |||| || | | || |||||| ||||| | Sbjct 5332 GAATTGAATAATTCATTACTATCGAGATGTCCAGTCATTAAATTGGAAAAATTAAAACCA 5391 Query 46758 AAAGATATTA 46767 ||||||||| Sbjct 5392 CAAGATATTA 5401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591751838759552