Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq2503 118 7e-22 seq82 102 6e-17 seq1286 96.9 2e-15 >seq2503 Length=4936 Score = 118 bits (130), Expect = 7e-22 Identities = 234/338 (69%), Gaps = 19/338 (6%) Strand=Plus/Plus Query 94435 TCGGAGACGAACGCGCCCTGTATCCGGAT-GGCG--CTGCGCGCCCCCACCGGCAGGAAT 94491 ||||||||||||||||| || | ||||| ||| ||| | ||| ||||| | | Sbjct 101 TCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTG---GTGCCCGGCGGCATGTAG 157 Query 94492 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 94551 | | |||||| |||| || |||||||| ||||||| ||| | ||| |||| | Sbjct 158 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 217 Query 94552 TCGGTGAGG---GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGG 94608 ||| | | ||| | ||| |||| || || | || | |||| |||||| ||| Sbjct 218 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 274 Query 94609 CCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCA 94668 || || | ||| ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 275 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 334 Query 94669 CGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCA 94726 ||||||||||| ||||| ||| | || ||| | || ||| |||||| | | || Sbjct 335 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGACC---TTCTTGCCGACGATCA 389 Query 94727 TCATGAGGTCCGCGAGTTCATCCACCACTACCACGATG 94764 |||| | ||| || | ||| || ||||| ||||||||| Sbjct 390 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 427 >seq82 Length=463168 Score = 102 bits (112), Expect = 6e-17 Identities = 225/331 (68%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 94788 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 94844 || ||||||||| ||| ||||| ||||| ||||| |||||||| ||||| Sbjct 196052 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCTTGACGGT--- 195996 Query 94845 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 94904 ||| ||||| | || |||| | | || || || |||||| ||| || || || Sbjct 195995 CCATTTCAGCGCTACGACGGCCTTCTTCGGATCGGTCACGACGGGCGTGAGCAGATGCGG 195936 Query 94905 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 94963 || |||| || | || || | ||| || || ||||||||||| || | | Sbjct 195935 AATGCCGTCATAGATCGACAGTTCCAG-CATCTTCGGATCGATCATGATCAGGCGGCACT 195877 Query 94964 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 95023 | || |||||| ||||| |||||||| | | ||| | ||||||| ||| || | Sbjct 195876 GTTCCGGGGTCATGCGGTAAAGCAGCGACAGGATCATGGTGTTGATGGCAACGGATTTAC 195817 Query 95024 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGA-GACG 95082 |||| ||||| | || || |||||||||||||||||||| |||| | || | || ||| Sbjct 195816 CCGAGCCGGTGGTACCTGCAACCAGCAGATGCGGCATCTTCGCCA-GATCGGCGATGACC 195758 Query 95083 TCCTTACCCTCGACGTCCTTGCCCACTGCCA 95113 ||| || | || | |||||||| |||| Sbjct 195757 GCCTCGCCATTGATGGTCTTGCCCAGCGCCA 195727 >seq1286 Length=49315 Score = 96.9 bits (106), Expect = 2e-15 Identities = 203/294 (69%), Gaps = 13/294 (4%) Strand=Plus/Plus Query 94791 GCGCACGCC-AGCCTCCTG-CATCTGCCGGTATCGGTCGTCCATCTC---TACGGTGAGC 94845 ||||||||| ||| | || ||||| |||||| ||||| ||||| || ||| | | Sbjct 14218 GCGCACGCCCAGCTT--TGACATCTTCCGGTAACGGTCTTCCATTTCGCGTACCGC---C 14272 Query 94846 CACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGG 94905 ||| ||||| | ||||||| | | || || || || || || ||||| || Sbjct 14273 CACTTCAGCGCCATGACCGCCTTTTTCGGGTCGGTCACAACAGGGGTAAGCAGGTGCGGA 14332 Query 94906 ATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGTTTGACCCGA 94965 ||||||| || | || || | ||||||||||| |||||| || | | Sbjct 14333 ATACCGTCATAGATCGACAGTTCTAGCATTTTGGGGTCGACCATGATCAGGCGGCACTCT 14392 Query 94966 TCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGAT-GAAGCTGGACTTGCC 95024 || || ||| |||||| ||||| || | | ||| | |||||| | | | |||||||| Sbjct 14393 TCCGGCGTCAGCCGGTAAAGCAGTGACAGGATCATGGTGTTGATCGCAAC-CGACTTGCC 14451 Query 95025 CGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGA 95078 ||| || || | || || ||||||||||||||||||||||| | |||||| || Sbjct 14452 CGAACCCGTTGTACCGGCAACCAGCAGATGCGGCATCTTGGCGA-GTTCAGCGA 14504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340089374966432