Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq4209 131 4e-26 seq1617 89.7 1e-13 >seq4209 Length=1822 Score = 131 bits (144), Expect = 4e-26 Identities = 178/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 38206 GGTGTAAACAAGGTGATCTTAATTGGTCACCT-TGGTCAAGATCCAGAGGTGCGCTATCT 38264 || ||||| || |||||||| |||| ||||| ||||||||||||||| ||||| | Sbjct 656 GGCGTAAATAAAGTGATCTTGGTTGG-CACCTGTGGTCAAGATCCAGAAACTCGCTACTT 598 Query 38265 ACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTTTGGCGGGATAA 38324 ||| | ||| ||||| | || ||| | ||||| |||| ||| || || Sbjct 597 ACCGAACGGTAATGCAGTAACCAATCTCAGCCTTGCAACAAGTGAGCAGTGGACTGACAA 538 Query 38325 GCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGGAAGCT 38384 |||||| |||||| | || || || || |||||||| ||| ||||||||||||| | Sbjct 537 GCAAACGGGACAGAAAGTCGAAAAGACCGAATGGCACCGTGTTTCTTTGTTTGGGAAAGT 478 Query 38385 GGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGCCAGCT 38444 |||||| | ||||| || || || || |||||||| || || || || ||||| |||| Sbjct 477 CGCTGAAATCGCTGGTGAGTATCTGCGGAAAGGATCGCAGGTATACATCGAAGGTAAGCT 418 Query 38445 TGAAAC 38450 | |||| Sbjct 417 TCAAAC 412 >seq1617 Length=5386 Score = 89.7 bits (98), Expect = 1e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38212 AACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAGGTGCGCTATCTACCAAGC 38271 |||||||| || | | || | ||| || ||||||| || || || || | || | | Sbjct 4971 AACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCGGAAGTCCGTTACATCCCCAAC 4912 Query 38272 GGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTTTGGCGGGATAAGCAAACC 38331 || ||||||||||||||| | | || ||||| || ||||| || || || || Sbjct 4911 GGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAAACCTGGCGTGACAAACAGACA 4852 Query 38332 GGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGGAAGCTGGCTGAA 38391 || || ||| | ||||| ||||| || || |||| || ||||| || ||| Sbjct 4851 GGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTGCTGTTCGGCAAGCTCGCGGAA 4792 Query 38392 GTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGCCAGCTT 38445 || ||||||||||| || || || || | || || || || ||||| |||||| Sbjct 4791 GTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAAGGTCAGCTT 4738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132886931244228