Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq322 197 3e-45 seq982 174 3e-38 seq540 167 5e-36 seq391 129 1e-24 >seq322 Length=112280 Score = 197 bits (218), Expect = 3e-45 Identities = 183/232 (79%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| ||||| || ||||| || || ||||||||||| || || || || |||| Sbjct 11233 TACCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAG 11174 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||||| |||||| |||||||| || ||||||||||| || || | Sbjct 11173 AGAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTG 11114 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || | || ||||||||||| |||||| | ||| | Sbjct 11113 GGATACCTTCTTTGTCTTGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAA 11054 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||| || || || || || || ||||| ||||||||||| || |||||||| Sbjct 11053 CTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATTAT 11002 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | | |||||||| || |||||||||||||| || || || || |||| Sbjct 11689 TACCACCTCTAAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAG 11630 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||||||||| |||||| |||||||| || ||||||||||| || || | Sbjct 11629 AGAGGGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTG 11570 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||| | |||||||| ||||| |||||| | ||| | Sbjct 11569 GGATACCTTCTTTGTCTTGGATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAA 11510 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || ||||| ||||||||||| || ||||| Sbjct 11509 CTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || || || |||||||| || || || || |||| Sbjct 11917 TACCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAG 11858 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||||| |||||| |||||||| || |||||||||||||| || | Sbjct 11857 AGAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTG 11798 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || | || || |||||||| |||||| | ||||| Sbjct 11797 GGATACCTTCTTTGTCTTGGATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTA 11738 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || ||||| ||||||||||| || ||||| Sbjct 11737 CTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || ||||| || ||||| |||||||| || || || || ||||| || | | ||| ||| Sbjct 12128 AGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCT 12069 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| || |||||||| || |||||||||||||| || || || |||||||||||| Sbjct 12068 TCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCT 12009 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| | || ||||||||||| || ||| ||| ||||| || || || || Sbjct 12008 TGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAAGGTAATAGTT 11949 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| ||||| ||||| || ||||| Sbjct 11948 TTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || ||||| || ||||| |||||||| || || || || || |||| | | | ||| ||| Sbjct 11444 AGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCT 11385 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | |||||| |||||||| || |||||||||||||| || || || ||||| || ||| Sbjct 11384 TCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 11325 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || | ||| || ||||| || || ||| | ||| ||||| || || || || Sbjct 11324 TGGATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTT 11265 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| ||||| ||||| || ||||| Sbjct 11264 TTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 >seq982 Length=41121 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | | || ||||| || ||||| |||||||| || || || || || | Sbjct 2594 TACCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGG 2653 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | ||| ||||||| |||||| || || || || |||||||||||||| || | Sbjct 2654 ATAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTG 2713 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||||||||| | || ||||||||||| || ||| | ||| | Sbjct 2714 GGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 2773 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || ||||| ||||||||||| || ||||| Sbjct 2774 CTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCAT 2822 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || ||||| || |||||||||||||| || || || |||||||| || | | ||| ||| Sbjct 1927 AGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCT 1986 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | |||||| ||||| || || |||||||||||||| || || || ||||| || ||| Sbjct 1987 TCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 2046 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| | || || |||||||| || || | |||||| || || || || || Sbjct 2047 TGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGTGATAGTT 2106 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| ||||| ||||| || ||||| Sbjct 2107 TTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || || || ||||| || || || || || || | Sbjct 2138 TACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGG 2197 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | ||| ||||| | |||||| || |||||||| ||||||||||| || || | Sbjct 2198 ATAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTG 2257 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||| | || || ||||| || || ||| | ||| | Sbjct 2258 GGATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGA 2317 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || ||||| ||||||||||| || ||||| Sbjct 2318 CTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || || || ||||| || || || || || || |||| | | | ||| ||| Sbjct 2383 AGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAAAGTACGACCATCT 2442 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | |||||| ||||| || || |||||||||||||| || || || ||||| || ||| Sbjct 2443 TCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 2502 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| | || ||||||||||| || ||| | ||| |||||||| || || || Sbjct 2503 TGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATAGTT 2562 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| ||||| ||||| || ||||| Sbjct 2563 TTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 >seq540 Length=89862 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || || || ||||| || || || |||||||||| Sbjct 83859 TACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAG 83800 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| | |||||| || |||||||||||||||||||| || || | Sbjct 83799 AGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTG 83740 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| || || | || ||||||||||| || ||| | ||| | Sbjct 83739 GGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 83680 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || || || || || || || ||||||||||| || |||||| Sbjct 83679 CTTCTAATGTGATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCATT 83630 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | | |||||||| || ||||| ||||| || || || |||||||||| Sbjct 84315 TACCACCTCTGAGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAG 84256 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| | |||||| || |||||||| ||||||||||| || || | Sbjct 84255 AGAGGGTACGGCCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTG 84196 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| || || | || ||||||||||| || ||| | ||| | Sbjct 84195 GGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 84136 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || ||||| ||||| ||||| || ||||| Sbjct 84135 CTTCTAATGTGATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | ||||| | || || || |||||||| || || || ||||||| Sbjct 84543 TACCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAG 84484 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| | |||||| || ||||| || |||||||||||||| || | Sbjct 84483 AGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTG 84424 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| || || | || ||||||||||| || ||| | ||| | Sbjct 84423 GGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 84364 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || ||||| || || ||||| || ||||| Sbjct 84363 CTTCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | | || ||||| || || || |||||||| || || |||||||||| Sbjct 84087 TACCACCTCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAG 84028 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| | |||||| || ||||| || |||||||||||||| || | Sbjct 84027 AGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTG 83968 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| ||||| | || || |||||||| || ||| || | Sbjct 83967 GGATACCTTCTTTATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAA 83908 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || ||||| || || ||||| || ||||| Sbjct 83907 CTTCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 >seq391 Length=66319 Score = 129 bits (142), Expect = 1e-24 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 |||||||| || || || ||||| || || || || ||||| || | | | ||| ||| Sbjct 37225 AGAACTAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTTGTAAAGTACGACCATCT 37284 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 |||| |||||| ||||||||||| |||||||||||||| || || || ||||| || ||| Sbjct 37285 TCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCT 37344 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || || || || ||||| || || || |||||||| | ||| |||||| Sbjct 37345 TGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATCCCTCTACTTCGAGAGTAATCGTC 37404 Query 82779 TTGCCT 82784 || ||| Sbjct 37405 TTACCT 37410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981729405715386