Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_024782.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq3974 248 2e-61 seq2008 154 3e-33 seq3067 150 4e-32 seq7244 84.2 5e-12 >seq3974 Length=4040 Score = 248 bits (274), Expect = 2e-61 Identities = 272/362 (75%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 1401 AAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGT 1460 || || || || || | ||||||||| ||| || ||||| | | ||||| || || Sbjct 2516 AAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGG 2457 Query 1461 GAGTGCAACTACGCCGCCCAAATCAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGAC 1520 | ||||| | ||||| || |||| |||||| ||||||| |||||||| | || ||| Sbjct 2456 AATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGAT 2397 Query 1521 CTTGACCGTTACGAGGTCGCCGCCCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAG 1580 || ||||||||||| | | || |||||||| ||| |||| |||||||||||||||||| Sbjct 2396 CTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAG 2337 Query 1581 AACATGCTCGACGCCTGGTCGAGCCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGC 1640 ||||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| | Sbjct 2336 CACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGA 2277 Query 1641 GCCGCCCTCCTGGAGGACGTCTGCGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTG 1700 ||| | || || || || || || || || | | ||| |||||||||| | Sbjct 2276 GCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAA 2217 Query 1701 CGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTTCTCGCCGAGTTGGGCCGTCTTGAG 1760 ||||| ||||||||||||||||| ||||||||||| ||| ||| | || ||||| | | Sbjct 2216 CGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCG 2157 Query 1761 CG 1762 || Sbjct 2156 CG 2155 Score = 123 bits (136), Expect = 6e-24 Identities = 277/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236 ||||| | || ||||||||| || | || || || |||||||| || ||| || | Sbjct 3763 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 3704 Query 237 GGGACGATCATTTCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAAG 296 ||||| | ||| ||| ||||||||||| ||||||||||| | ||||||||||| Sbjct 3703 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 3644 Query 297 CGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGACTGCCGCG 356 | | || || | || |||||||||||||||||||| || | |||||| || ||| | Sbjct 3643 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTCT 3584 Query 357 TCTTGGACCGTTGACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGCAGAGGC 416 | | | || | |||| || | | ||| ||||| ||||||| || || | Sbjct 3583 CCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCCC 3524 Query 417 TCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCCTTTTTT 476 ||||| || || ||| | | ||||| || || | | | | ||||| || | || Sbjct 3523 TCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTTG 3464 Query 477 CGCAGGCTGTACCGAGTGAATGCAAGATTCACAAGCACGGTGGCGCCGTCGGTCCAGGAA 536 || || |||| ||||| ||||| | || || || || || ||| |||||| Sbjct 3463 CGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGGCG 3404 Query 537 CCATGCCCTGCGCTCACCTGGCCGTCATAGAGGGGTATGTATACATACTCGCCCTC 592 || || || || || ||| |||| || | || | ||| | |||| | |||| Sbjct 3403 CCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCCTC 3348 >seq2008 Length=9006 Score = 154 bits (170), Expect = 3e-33 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 25580 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25639 ||||||||||||| |||||||||||||| || || |||||||||||||||||||||| Sbjct 711 CGATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGG 770 Query 25640 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 25698 | ||||| ||||| || ||||| || | ||| |||||| | || ||||| ||||| || Sbjct 771 CAGACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCT 829 Query 25699 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 25740 ||||||||| |||||| ||||| || || ||||| |||||| Sbjct 830 TCGGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGAT 871 Score = 147 bits (162), Expect = 5e-31 Identities = 470/720 (65%), Gaps = 18/720 (3%) Strand=Plus/Plus Query 26527 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 26586 ||| |||| |||||||||||||||| || || ||||||||||| | | ||| Sbjct 1592 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCGCTGGAGGCCGTCAAAGGCAAG 1651 Query 26587 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 26646 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 1652 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 1711 Query 26647 AACATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCT--CCAGCTCAACG 26704 ||||||||||||||||| |||||||| | | || || || | ||| | |||| Sbjct 1712 GGGATGGTCAAGGCGCAGAAAGAGGCCGACAACCAGCTTGAGGTGTTGGCCACC--AACG 1769 Query 26705 AACAGGGGCGCCTGAAGAAACAGACCCAGGCAGTCAAGGCCTACAGCGATGCGCTCCAGC 26764 | || |||||| || ||| | | || ||| ||||| | || || | Sbjct 1770 AGACCGGACGCCTGGCCAAGCAGGAACGGTCAATCACCACCTACGTGCAGGCCCTGGCTC 1829 Query 26765 AACAACAGGATGCGCTGGCCCTCCAGGGCCAACGTGCCGCCGCTGCCGTGGGCATGGGCG 26824 | |||||| || |||| || |||||||| || | || ||||||| ||| | Sbjct 1830 AGCAACAGCGAGCCCTGGAACTTGCCGGCCAACGCGCAGTACTTGGCGTGGGCCAGGGGG 1889 Query 26825 --CGCAACAGCGCCGCCTGTTCGATCAGCGTGGCAGCCTTGACGACCGATTCGCGCAGCA 26882 ||| | | ||| || || | | ||||| | ||||| || || ||||| Sbjct 1890 ACCGCCAGAACGCA--CTCAACGGCGAACTGAACAGCCAGCAAGACCGGTTTGCTCAGCA 1947 Query 26883 GCGCCTGGACCTGGCGAGCCAGTATGGTGACGGCTCGCGAGGCATGAGCCTCGACGAGTA 26942 | ||||| |||| | |||| | ||| ||||| |||| || |||| Sbjct 1948 GTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAACATGTCGGAGGAGGAGTT 2007 Query 26943 CAA-CGACAAGCTCAAGGCGCTGGAAG---CGAACCATGCCGCGA-TGACCCAGCAGCTG 26997 ||| ||| || | || |||||| | || ||||| | ||||| | ||||| || | Sbjct 2008 CAAGCGAAAATCCCA-GGCGCTTGCAGATGCGAACAAGGCCGCCACTGACC----AGATC 2062 Query 26998 CAACGCAACTACGCCGACCTTCAGGCCGCCCAGGGCAACTGGGTCAACGGGGCGACGTCG 27057 | | ||||| || || | || ||| |||||| ||||| || || ||||||||| Sbjct 2063 CGGCAGAACTATGCGGATGTGGAGAACGCACAGGGCGACTGGACGAAGGGCGCGACGTCG 2122 Query 27058 GCGTTCGCTGACTACATCGACTCCGCCAGGAACAGTGCGGGCCAGACCTACGAACTGTTT 27117 || | || ||||| | || || || | ||||| ||| ||||||||| | ||||| Sbjct 2123 GCCTGGGCCAACTACCTGGATTCGGCGAAGAACATTGCCGGCCAGACCAAAAGCCTGTTC 2182 Query 27118 AGTAACGCCTTCTCCGGTCTGGAGGATGCCGTCGTTAATTTCGTGATGACTGGCAAGGCG 27177 | || |||||| | | ||||||| || || || || |||| ||||| |||||||| Sbjct 2183 GGCAATGCCTTCAGCAGCATGGAGGACGCGGTAGTCAACTTCGCAATGACCGGCAAGGCA 2242 Query 27178 TCGCTGGATGACTTCGTCCGCACCATGATTGGCGACGTGGCCAGGATGGCGACCCGCCAG 27237 ||| | ||||||| | || ||| ||| ||||| | || || ||||||||| Sbjct 2243 TCGTTCTCGGACTTCGCTAAATCGATCCTTGCAGACATGGCCCGCATTGCTACCCGCCAG 2302 >seq3067 Length=6736 Score = 150 bits (166), Expect = 4e-32 Identities = 479/727 (66%), Gaps = 48/727 (7%) Strand=Plus/Minus Query 8801 CATTGAGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8860 |||| ||||||| ||||||||| || ||| |||||||||||||||||| ||||||||| Sbjct 2330 CATTAAGCGAAATCGCCCCGGCGC-GCTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 2272 Query 8861 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCG 8918 ||||||||||||||||||||| ||||| ||| | |||| ||| | |||||||| Sbjct 2271 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 2214 Query 8919 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGATGCCCTGCGTC--GCGC--TGCGCTGGG 8974 | || || |||| || ||||| ||||||| | ||| | |||| || |||| Sbjct 2213 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA----CAGCGACAAGCGCCTGGCCATGGG 2158 Query 8975 CGGCCGCCGCTTCAACATGGACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTG 9034 | | || |||| ||||| || ||| || || | | || || | |||| | Sbjct 2157 TGCCAGCAAGCTCAAGATGGAAATCTACAGCGGCACCCAAAACGAGCTGGAACAGATCCG 2098 Query 9035 CGCGGCCGGTGGCTTCGCCGAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGC 9094 | | |||||| |||| ||| | | | | || |||| || | | || || || Sbjct 2097 CACCGCCGGTAAGTTCGACGAAACAGACCATGCACTCACGATGACCATTCATGGTGTCGC 2038 Query 9095 CGAAAT-TGCAGAGCGTGACGCGTCA-CGTTTTGCCGAGT--TGATCCAAAAGAGAAGCC 9150 | | | | || | ||| || || |||| || || |||| |||| ||| | Sbjct 2037 TGCGTTGTCCCGAAC-CGACCCGGCAGCGTT---CCAGGTACTGAT-CAAAGGAGGA--- 1986 Query 9151 ATCCAGGGAGGACCAAGCGATGAGCCTACGCGCCGTCAACCTCGCAAAAATCCACATCGC 9210 | ||| ||||| || | ||| || | | | || ||||||||||| Sbjct 1985 AGACAG---TGACCACACG--TAACCT----GCAATTGAGC-----AAGATCCACATCGC 1940 Query 9211 CAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCTCGCGTCGCGGG 9270 |||| | || || |||| || || ||||| || || ||| ||| ||||| ||||| Sbjct 1939 CAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTGGGCCGCGTGGCGGG 1880 Query 9271 CGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTGGTCGAACTCCA 9330 ||||| |||||||| ||| | ||| |||||||||| | ||||||| ||| | Sbjct 1879 TGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTACTGGCCGAGTTTGC 1820 Query 9331 GCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGGGCGACGCCAAAAGT 9384 ||| |||||||| ||||||| | || ||| ||||| | || | | Sbjct 1819 CCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGCAAGGGACCGATGGC 1763 Query 9385 GCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAGCGCCCATCG 9444 | ||| | ||||| || || || | ||||| || | || ||| ||| | || Sbjct 1762 GGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTCGCCGAGGCCAAACG 1703 Query 9445 CCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTCGAGCGGGTCGAGTG 9504 | ||||| || |||||| ||||||| |||||||||| |||||||||| || || || Sbjct 1702 CTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTCGAGCGAGTGGAATG 1643 Query 9505 GCTGGAC 9511 ||| ||| Sbjct 1642 GCTAGAC 1636 Score = 95.1 bits (104), Expect = 3e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 6157 GCCTGGGGCGAGCGCCCGCCTGTCTTCGTCCAACTGCTGGCCGCTGAGGTGGCCCGCAGC 6216 || |||||| || | |||| | ||||| | ||||| ||||| || || || || | Sbjct 5466 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 5407 Query 6217 AGCCAGACGAAAGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6276 | | |||| || ||| || || |||||||||||||| || |||||||| | ||| Sbjct 5406 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 5347 Query 6277 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGTCGTGTCCTGGCCGCGCTG 6336 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 5346 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 5287 Query 6337 AGCCGCATTGAGTGCCCGGCCCTGGGCGAGGCGGTGACCTCGGTCGAGTG 6386 | |||||||| || ||||||| |||| | || ||| ||| | |||| Sbjct 5286 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTG 5237 Score = 87.8 bits (96), Expect = 4e-13 Identities = 263/399 (66%), Gaps = 14/399 (4%) Strand=Plus/Minus Query 4876 ATCCTGGGTGAAATGGGCATCAAGCCGGCCGGGACCATCCCGGAAATGGCCGACCAGATC 4935 ||||| | || ||| ||||| | |||||| |||||| ||| |||| |||||||||| Sbjct 6602 ATCCTTCGCGAGATGAGCATCCAACCGGCCCCGACCATGTCGGTGATGGTCGACCAGATC 6543 Query 4936 GCCGAGGAACTGGCCGCCAGCGGCCGCCCGCTGATCATCGACGAAATGGACCACCTGGTC 4995 || ||| | || || ||||| ||||||||| | |||||||| || | ||||| || Sbjct 6542 GCTGAGCAGTTGTCCAAGAGCGGGCGCCCGCTGTTGATCGACGACGTGCAATACCTGCTC 6483 Query 4996 ------GCCGCTGGCCAGGTCGAGCTGATTCGTGATCTGTACGAGTCCAGCCAAGCCTCC 5049 |||| | |||| || |||| || ||| ||| | ||||| ||| || Sbjct 6482 GAAAAAGCCG-TAGCCA--ACGTCCTGA-CCGACATC--TACAACGCCAGCGAAGGGACC 6429 Query 5050 ATCTTGCTGATCGGCGAGGAAATGCTGCCGACCAAGCTCAAGAAGTACGAACGCTTCCAT 5109 || | ||||||||||| ||| |||| | || |||| |||||| | ||| Sbjct 6428 ATTGTCCTGATCGGCGAAGAACGTGTGCCCGGTAGCCTGGCGAAGCTGGAACGCCTGCAT 6369 Query 5110 GGCCGCGTTCTCAGCTGGGTTCCGGCCCAGCCAGTGTCCCTGGAGGACGCCCGCAACCTG 5169 ||| || || ||||| || || |||| | ||||||| || ||| |||| Sbjct 6368 AACCGGGTGCTGGAGTGGGTACCTGCGCAGCGCGCCACCCTGGACGATCTGCGCGCCCTG 6309 Query 5170 GCGCCGGTCTACAGCCCCGGAGTGGC-TATCGCTGACGATTTGCTCGCGCACCTGGTGAA 5228 || | ||| | |||||| | || ||||||| |||||||| | ||||| || Sbjct 6308 GC-CGAGTCAAGCTACCCGGAATTGCACTTCGCTGATGATTTGCTGGATGACCTGCGCAA 6250 Query 5229 GAAGTCCCTGGGCTCTGTCCGTCGCGTCGCGGTGAACCT 5267 |||| |||| | ||||| || ||||| ||||| Sbjct 6249 GAAGGTGAATGGCTGCCTGCGTCGTGTAGCGGTCAACCT 6211 >seq7244 Length=602 Score = 84.2 bits (92), Expect = 5e-12 Identities = 157/226 (69%), Gaps = 11/226 (5%) Strand=Plus/Plus Query 10888 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACG--CAACAA 10945 |||| ||||| | |||||| ||| ||||||||||||| || || | || |||| | Sbjct 382 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 438 Query 10946 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACAC 11005 ||||| ||||| || | ||||| || ||| || || ||||| || || || Sbjct 439 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 498 Query 11006 CGCGCATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11062 || | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 499 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 555 Query 11063 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCC 11108 ||| | ||||| | || | ||| ||||||||||||||| Sbjct 556 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCC 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117749128838400