Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq1445 354 2e-93 seq1635 167 6e-37 seq760 113 1e-20 seq1317 87.8 5e-13 >seq1445 Length=14432 Score = 354 bits (392), Expect = 2e-93 Identities = 655/950 (69%), Gaps = 13/950 (1%) Strand=Plus/Plus Query 7694 GAACCGCACCACCTCCTCCCCGATCCAGTCATTGACCGCCAACAGGCGGTCCTGCAATGG 7753 ||||| || ||||| || || | ||| || |||||| ||| | ||||||| || Sbjct 11793 GAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGCCAGCCTCGCCTGCAACGG 11852 Query 7754 CTTCACCTCGTTGCGCGCGAACACCAGGGCGGCCTTCTCCA-CGTCGCCGAATCCGCCGG 7812 || || ||||||| ||| | ||| || |||| | || || | || || ||||| | Sbjct 11853 CTCCAGCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGAC-CCAAAACCGCCCG 11911 Query 7813 TGTTGTTCGGGATGATGCCCATGAGCTGCGGCGGCACGCGGTGCGCGGCGAGTTGGTCGT 7872 ||| | ||| | ||||||||| | |||||| || | ||| ||| ||||| | |||| Sbjct 11912 CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAGATCGT 11971 Query 7873 CGCGCGTGACGTTTTTGACGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGGTA 7932 | || ||| |||||||| | ||| |||||||| || || |||||| |||||| | Sbjct 11972 CACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCACCGGGA 12031 Query 7933 GCAGCTGGATCCCGTCCTTCTTGCCGTTAGGCGCGTACATGAACAGGTTGCGGAAATTGC 7992 ||||| || ||||| |||||||| |||||||||| ||||||||||| || |||| Sbjct 12032 TGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCGAAAGTTGC 12091 Query 7993 CCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGACATCCTCTTGCCTCTGCG 8052 | ||||| || | |||||| || |||||| | ||||| ||||||| | |||||| Sbjct 12092 CTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCTTCCTTCTGCG 12151 Query 8053 CCGCGTCGGTCATGTACAGGATGAAACCGGCGTGGGAGCCGTTTTTGTAGTACCGGCGGC 8112 ||||||||||||||||||| ||||||||||| ||| |||||| ||||||||| ||| | Sbjct 12152 CCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGTACTTGCGCC 12211 Query 8113 GGAACAGCGTGGCCGATTCGTTCAACCATGTGGCGTTCAACGCGGACAGGTATTCCGGCA 8172 ||||||||||||| ||||| | | || | | || ||| | ||| | ||||||| Sbjct 12212 GGAACAGCGTGGCGCTCTCGTTGAGCAGTGCGCTTTGCAGCGCTGCCAGCCACTCCGGCA 12271 Query 8173 GGCCGTACACCTCCTGATTGATGTCCGGTTCCTGGAGGTGGAACACTGAGCCGGCGGCGA 8232 ||||||| | ||||| ||||| || | || | | |||| | | || |||| ||| | Sbjct 12272 GGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGAACCGGGGGCAA 12331 Query 8233 A--GATGTACGGCTGCTGCCAGTTCTGCACGAAAAAATAGGTGTTCAGGTCGAGCCCGCG 8290 | |||| || | || |||| |||| ||||||| | || ||| | || || Sbjct 12332 ATTCATGTTCG--TCCTTCCAGCCACGCACCTGGTAATAGGTCTCCATGTCCACACCCCG 12389 Query 8291 CCGCACGTACTTGGCCAGGGGCGTATCGAGCCGGATTGTCCCGCCCAACACGTTTTCGCG 8350 |||| |||||| ||||| || | || | || || || | || ||| | ||| Sbjct 12390 GCGCATGTACTTCGCCAGTGGAGGCAGCAGGCCCATGGTGTTGCGGAGCATGTTGTTGCG 12449 Query 8351 GCGCTCCAGGTACGCA-TTGCCGAACACC--TGCCAGTCCAGCACCAGGCGCTCGAAGGT 8407 |||||||| ||| ||||| ||||| |||||||||| | | |||| |||| Sbjct 12450 CTTTTCCAGGTA-GCAGTTGCC--ACACCAGAGCCAGTCCAGGGCGAACTGCTCAAAGGC 12506 Query 8408 CGCGCGCGACAGCAGCGGATGCGGAATGAACGTCGAGACCAGGATATTGCGCTTCACGTA 8467 ||| || |||| | || |||| |||||| | | || || |||||||| | || Sbjct 12507 TTGGCGACTCAACAGCCGGTGGGGAACGAACGTGCGGGCAAGCATGTTGCGCTTGAAGTT 12566 Query 8468 GACGGCCGAGCTGTGGTGCGCGGCGGCGCGGAACGAGCGCGCCAGGCCATCCCACGGCAT 8527 | | |||| | ||| | || ||| ||| || ||||||||| ||| | ||| Sbjct 12567 CA-GCCCGACTGGAGGTACACGCTGGCCCGGGTCGTTTTCGCCAGGCCGTCCATGGACAT 12625 Query 8528 GGGCGGTTCATACCACTGGCCCATGCGCATGCACTCGACGTAATCCAGCAGCTCGCGCCG 8587 || | |||| |||| |||| || | |||||| | ||| || || | ||| || | Sbjct 12626 CGGTGTTTCAAACCAACGGCCATTGGCCCAGCACTCCAGGTAGTCGAGGATCTCCCGGCT 12685 Query 8588 GTCCAGCACTTCGACGGGATCGCCGAAAGAGAACACCTCGGCCTGCGCGG 8637 |||| ||| ||||||| ||||||| |||| | || || || ||| Sbjct 12686 ATCCAACACGGGAGCGGGATCACCGAAAGTGAACGCTTCAACCGGCCCGG 12735 Score = 89.7 bits (98), Expect = 1e-13 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 8918 TCCGCCCAGCCGGCGTCGAACTCCAGCCGGCCCTTGCTGATCACGTCGTGCGCCTTGAGC 8977 |||| |||||| || ||||||||||||| ||| || |||| ||||||| ||||| ||| Sbjct 12998 TCCGTCCAGCCCGCATCGAACTCCAGCCTGCCGTTTTTGATGACGTCGTAAGCCTTCAGC 13057 Query 8978 ACCAGGGCGGTTTTCACTTCCACGGAATAGGTGAAGCCTTCGGCGTCCGGGCGGAACTTC 9037 |||||| |||||| ||||| || ||| |||| | || |||| ||||| | Sbjct 13058 ACCAGGCGGGTTTTGACTTCGGGTGAGTAGCTGAACGTGGTGATGTTCGGGAAGAACTGC 13117 Query 9038 TGCACCAG--GCGGAACACCGCATCGCCGATGCCGGTCCGGTCGATGCCCACGTAGGCGA 9095 | |||||| ||| || ||| | | ||| ||||||| ||||| || | ||||| | Sbjct 13118 TTCACCAGCTGCGCCACGCCGGAAC-CCG-TGCCGGTGATATCGATCCCGATGTAGGTCA 13175 Query 9096 CGTTGTAGCG 9105 | |||||| Sbjct 13176 CCCAGTAGCG 13185 >seq1635 Length=1340 Score = 167 bits (184), Expect = 6e-37 Identities = 596/912 (65%), Gaps = 31/912 (3%) Strand=Plus/Minus Query 17744 GTCCGCGCATCATCCATAGATTGCTCAGGGCAAACAACGTATGTAACTGCTGCGTGTTCT 17803 ||| |||| |||||| || || ||| || |||| || | ||| |||||| | Sbjct 1156 GTCGGCGCGCCATCCACAGGTTCGACAGAGCGAACAGTGTCACCAGTTGCGCCGTGTTTT 1097 Query 17804 TCACCAAGCCTCGATAGCGCACCTTCAAATGCCCGAACTGGCGCTTGATGACCCGGAACG 17863 | ||||||| ||| |||||||||| | ||||||||||||||||| |||||||||| Sbjct 1096 TGGCCAAGCCGCGAAAGCGCACCTTGGTGTAACCGAACTGGCGCTTGATTACCCGGAACG 1037 Query 17864 GATGTTCTACGCGAGCACGAATGCGCGCCTTGACCCGCTCCAACTCATCGACGAGC---G 17920 |||| || || || || | | |||||| || || | || || || | Sbjct 1036 GATGCTCGACCTTGGCGCGCACCTGAGCCTTGGCCTTTTCAATCTTG-CGCTTGGCTTTG 978 Query 17921 CACCCGACACGGTGTTCTTGTCCAAGGCGCGGCGTTTGCTCGGTCGCAATGCCACATGCC 17980 || |||| || ||| || | | |||| | || ||||| |||| Sbjct 977 TACAG--CACGCTGCGCTTATCGAGTTTTTTGTAGGTGCTGCGGCGTGCCGCCACCTGCC 920 Query 17981 AACGCACCTTCAACTTCTGCAC-CTCTTCGCGCTTGTCGATGCCCTGGTAGCCGGCATCG 18039 | || |||| | || || ||| ||||| |||| || |||||| |||||| Sbjct 919 AGATAAC-TTCACGTCCTTCATGCTCGGGCCGCTTTTCGACACCGGTGTAGCCTGCATCG 861 Query 18040 CCGAATACGTCGGCCTCCTTACCGTGCACCAACGCATGCGCTTGCGTCACGTCGTTGACG 18099 || | || || || | || |||| ||| | | | || || || || || Sbjct 860 GCGCAGACCACGTTTTCGTCGCCATGCAGCAATTTGTCCACCTGGGTGACATCCGCCACA 801 Query 18100 TTGGCGGCCGTGCCCAGCACGGTATGCACCAGCCCCGAGTCCGCATCCACGCCAATGTGC 18159 ||||| |||||||||| ||| | |||||||| ||||| || |||| |||| ||||| Sbjct 800 TTGGCCGCCGTGCCCACTACGCTGTGCACCAGACCCGATTCGTCATCGGCGCCGATGTGG 741 Query 18160 GCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCGCGC 18219 || ||||| || |||| ||||||| || ||||||||||||||||| || ||||||||| Sbjct 740 GCCTTCATGCCAAAATAATACTGGTTTCCCTTCTTGGTCTGGTGCATTTCCGGGTCGCGC 681 Query 18220 TTGCCGCTGCCATTCTTGGTCGAGCTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTG 18279 |||||| ||||||||||| |||||||| ||||||| || ||||| | ||| Sbjct 680 TTGCCGTCCTTGTTCTTGGTCGAACTGGGCGCATTGATCAGCGTTGCATCGACGATGGTG 621 Query 18280 CCCTCTTTGAG---CAGGTAGCCCTTCGCACTGAGTTGCGCGTTGACCGTCTGCAGAAAT 18336 |||| || |||| | | |||| | || | || | |||| | | || || Sbjct 620 CCCTGGCGCAGCGACAGGCCG-CGGTCGCCCAGA-TAGC-CATTGA-TGACAGC-GAGGA 566 Query 18337 TGC--TCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGT 18394 ||| | ||||| | |||| |||||||||| | || ||| |||||| || || Sbjct 565 TGCCGGCCGCCAGCTCGTGTTTCTCCAGCAAGCGGCGGAAGTTGAGAATGGTGGTTTCGT 506 Query 18395 CCGGCAGTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACA 18454 | || | | ||| | | |||||| || || || || | || ||||||| Sbjct 505 CGGGGA-TGCGCTCCAGGTT--CAGCCCGGCAAACTGGCGCAGGATCGTGGTTTCGTACA 449 Query 18455 GCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCA 18514 |||| || |||||||| || | |||||||| | |||||| | || | |||| Sbjct 448 GCGCTTCCTCCATCGCTGGATCGCTGTAGCCGAACCAGTTCTGCAGCAGATGCACACGCA 389 Query 18515 GCATCG-TTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTGAC----CGGCGCATGCGG 18569 |||||| || || || | || ||| | | | |||| || ||| ||| || Sbjct 388 GCATCGCCATCAACGGGTA--GG---CCGGACGGCCACCTTCACCTTTCGGATAATGTGG 334 Query 18570 CGCTATCAACGCCAAAAACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATAC 18629 | | ||||| || | || ||| |||||||||||| || |||||||| ||| || | Sbjct 333 CTCGATCAAAGCAATCAAGCCCTTCCACGGCACCACCCGATCCATCTCGATCAGGAACAA 274 Query 18630 CTGCTTGCGCGT 18641 || |||||| || Sbjct 273 CTCCTTGCGGGT 262 >seq760 Length=2252 Score = 113 bits (124), Expect = 1e-20 Identities = 314/473 (66%), Gaps = 23/473 (5%) Strand=Plus/Plus Query 18179 ACTGGTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCGCGCTTGCCGCTGCCATTCTTGG 18238 |||||||||| ||||||||||| ||||| || ||||||||||| ||| ||||||| Sbjct 4 ACTGGTTACCCTTCTTGGTCTGATGCATTTCCGGGTCGCGCTTACCGTCCTTGTTCTTGG 63 Query 18239 TCGAGCTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCCCTCTTTGAGCA--GGTA 18296 |||| || ||||| ||||||| ||| ||||| | ||||| ||| | ||| | | Sbjct 64 TCGAACTCGGCGCATTGATCAGCGTGGCATCGACGATCGTGC---CTTGGCGCAGCGACA 120 Query 18297 GCCCT---TCGCACTGAGTTGCGCGTTGACCGTCTGCAGAAATTGC-TCGGCCAGTTGGT 18352 ||||| |||| | || | || | |||| | | || | || | |||| |||| || Sbjct 121 GCCCTCGGTCGCCCAGA-TAGC-CATTGA-TGACAGCCAAGATGCCGGCGGCTAGTTCGT 177 Query 18353 GTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCGGCTTATGC 18412 | ||||||||| | || ||| || ||| || || || | || | | Sbjct 178 GCTTCTCCAGCAAACGACGGAAGTTGAGGATGGTGGTTTCATCGGGGATACGCTCCAAG- 236 Query 18413 CTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCA 18472 | |||||||||||| || || | | ||||||||||||||||||||||| Sbjct 237 --CTCAGCCCCGCGAACTGGCGCAGGATGGTGGTCTCGTACAGCGCCTCTTCCATCGCTG 294 Query 18473 CGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAA 18532 || | |||||||| | |||| | ||| | ||||||||||| | ||| Sbjct 295 GATCGCTGTAACCGAACCAGTTTTGCATCAGGTGCACGCGCAGCATCGCCATCAGCGGAT 354 Query 18533 ACGGCTTCCGACCCGTCGCCTTGACC----GGCGCATGCGGCGCTATCAACGCCAAAAAC 18588 | | | |||| |||||| ||| || ||||||| | ||||| || | || Sbjct 355 AGGCCGGACGAC----CGCCTTCACCCTTGGGATAATGCGGCTCGATCAAGGCAATCAAA 410 Query 18589 GCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATACCTGCTTGCGCGT 18641 ||| |||||||||||| || |||||||| ||| || | || ||||| || Sbjct 411 CCCTTCCACGGCACCACCCGATCCATCTCGATCAGGAACAACTCTTTGCGGGT 463 >seq1317 Length=616 Score = 87.8 bits (96), Expect = 5e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 17796 CGTGTTCTTCACCAAGCCTCGATAGCGCACCTTCAAATGCCCGAACTGGCGCTTGATGAC 17855 |||||||||| ||| || || |||||||||||| || ||||||||||||||||| || Sbjct 237 CGTGTTCTTCGCCAGACCACGGAAGCGCACCTTCACATAACCGAACTGGCGCTTGATCAC 296 Query 17856 CCGGAACGGATGTTCTAC 17873 |||||||||||| || || Sbjct 297 CCGGAACGGATGCTCGAC 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127872994154832