Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq540 111 1e-19 seq322 105 4e-18 seq982 100 2e-16 >seq540 Length=89862 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | || | ||| || || |||||||| ||||||||||| || Sbjct 84542 ACCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGA 84483 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||||||||| ||||||||||| | | || ||||| | || Sbjct 84482 GAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGG 84423 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| || | |||| || | |||||| ||| | Sbjct 84422 GATACCTTCTTTATCTTGGATTTT-GGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 84364 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || ||||| ||||| || |||||| Sbjct 84363 CTTCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCATA 84314 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | |||||||| || || || ||||| ||||| ||||| || Sbjct 83858 ACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGA 83799 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||||||||| |||||||| || | | || || || | || Sbjct 83798 GAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGG 83739 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| || | |||| || | |||||| ||| | Sbjct 83738 GATACCTTCTTTATCTTGGATTTT-GGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 83680 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 83679 CTTCTAATGTGATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCAT 83631 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| ||||| || ||||| ||||| ||||| || Sbjct 84314 ACCACCTCTGAGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGA 84255 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||||||||| |||||||| || | | || || || | || Sbjct 84254 GAGGGTACGGCCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGG 84195 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| || | |||| || | |||||| ||| | Sbjct 84194 GATACCTTCTTTATCTTGGATTTT-GGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 84136 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || || || |||||||| |||||| Sbjct 84135 CTTCTAATGTGATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCATA 84086 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| || || |||||||| ||||| ||||| || Sbjct 84086 ACCACCTCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGA 84027 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||||||||| ||||||||||| | | || ||||| | || Sbjct 84026 GAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGG 83967 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || || || || | || | || | |||||| || | Sbjct 83966 GATACCTTCTTTATCTTGGATCTT-GGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAA 83908 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || ||||| ||||| || |||||| Sbjct 83907 CTTCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCATA 83858 >seq322 Length=112280 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | |||||||| || || |||||||| |||||||| || || Sbjct 11916 ACCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGA 11857 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || |||||||| || |||||||| | | || ||||| | || Sbjct 11856 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGG 11797 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| || | || | || | ||| || ||| | Sbjct 11796 GATACCTTCTTTGTCTTGGATTTT-GGTCTTGACGTTTTCAATGGTATCAGAACCTTCTA 11738 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || || ||||||||||| |||||| Sbjct 11737 CTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATA 11688 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| ||||| | || ||||| || || |||||||| |||||||| || || Sbjct 11232 ACCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGA 11173 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || |||||||| || |||||||| | | || || || | || Sbjct 11172 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGG 11113 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| || | |||| || | ||| || ||| | Sbjct 11112 GATACCTTCTTTGTCTTGGATTTT-GGTCTTGACATTTTCAATGGTATCAGAACCTTCAA 11054 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || |||||||| || || || ||||||||||| ||||| Sbjct 11053 CTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11005 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || ||||| ||||| |||||||| |||||||| ||||| | || || | || ||| Sbjct 11441 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCC 11382 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 |||||||| || |||||||| | | || ||||| | || | |||||||||||| Sbjct 11381 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 11322 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| |||| ||| | || | |||||| ||| || || | || || ||||| Sbjct 11321 ATTTT-GGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTTTT 11263 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || || || || ||||| || |||||| Sbjct 11262 ACCGGTCAAGGTCTTGACAAAAATTTGCATA 11232 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| ||||| |||||||| |||||||| || || Sbjct 11688 ACCACCTCTAAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGA 11629 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || |||||||| || |||||||| | | || || || | || Sbjct 11628 GAGGGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGG 11569 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || || | |||| || | ||| || ||| | Sbjct 11568 GATACCTTCTTTGTCTTGGATCTT-GGTCTTTACATTCTCAATGGTATCAGAACCTTCAA 11510 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || |||||||| || || || ||||||||||| |||||| Sbjct 11509 CTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATA 11460 >seq982 Length=41121 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| ||||| |||||||| |||||||| ||||| Sbjct 2595 ACCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGA 2654 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || |||||||| ||||| ||||| | | || ||||| | || Sbjct 2655 TAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGG 2714 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||| || || | |||| || | |||||| ||| | Sbjct 2715 GATACCTTCTTTGTCTTGAATCTT-GGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 2773 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||| || || || |||||||| || ||||| Sbjct 2774 CTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCAT 2822 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | | | || ||||| ||||| |||||||| ||||||||||| ||| Sbjct 1912 CCACCTCTAAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAG 1971 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||||||||| || || ||||| | | || ||||| | || Sbjct 1972 AGGGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGG 2031 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | |||||||||||| || || || | || | || | |||||| ||| ||| Sbjct 2032 ATACCTTCTTTGTCTTGGATCTT-GGTCTTGACGTTTTCAATGGTGTC---TGAACCTTC 2087 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| |||||||| || || || || ||||| || |||||| Sbjct 2088 TACCTCTAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCATA 2139 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | |||||||| || || || ||||| |||||||| ||||| Sbjct 2139 ACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGA 2198 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| |||||||| || | | || || || | || Sbjct 2199 TAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGG 2258 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || || | || | || | |||||| ||| | Sbjct 2259 GATACCTTCTTTGTCTTGGATCTT-GGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGA 2317 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || || ||||||||||| |||||| Sbjct 2318 CTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATA 2367 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || || ||||| |||||||| ||||| | || || | || ||| Sbjct 2386 ACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAAAGTACGACCATCTTCC 2445 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 |||||||| || || ||||| | | || ||||| | || | |||||||||||| Sbjct 2446 AATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 2505 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | |||| || | |||||| ||| || || | ||||| ||||| Sbjct 2506 ATCTT-GGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATAGTTTT 2564 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || || || || ||||| || |||||| Sbjct 2565 ACCGGTCAAGGTCTTGACAAAAATTTGCATA 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328672856734080