Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq982 134 3e-26 seq322 114 3e-20 seq540 111 4e-19 seq391 91.5 3e-13 >seq982 Length=41121 Score = 134 bits (148), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || ||||| ||||| |||||||| ||| |||||||||| | Sbjct 2814 TTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAAGGTTCTGACACCAT 2755 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||||||||| |||||||| || || || |||||||| Sbjct 2754 TGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAACAAAGACT 2695 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| |||||||| || || || |||||||| | ||||| |||| |||||| |||| || Sbjct 2694 TATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGACTACAACATCCAAAA 2635 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| || ||||| || | || | |||||| || Sbjct 2634 AGAATCAACTCTCCATTTAGTCCTCAGACTTAGA 2601 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || | || || ||||| ||||| |||||||| ||| |||||||||| || Sbjct 2357 TTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTCGAAGGTTCTGACACCATC 2298 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| ||||| |||||||| || || ||| ||||||||| Sbjct 2297 GAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAACAAAGACTT 2238 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| ||||| || || ||||||||||| | ||||| |||| |||||| |||| || Sbjct 2237 ATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAACATCCAAAAG 2178 Query 206359 GAGTCTACTCTTCA 206372 || || || || || Sbjct 2177 GAATCAACCCTCCA 2164 Score = 114 bits (126), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || ||||| ||||| |||||||| ||| |||||||||| | Sbjct 2586 TTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCTGACACCAT 2527 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||| ||||| |||||||| || || || |||||||| Sbjct 2526 TGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAACAAAGACT 2467 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| ||||| || || || ||||||||||| | ||||| |||| |||||| | || || Sbjct 2466 TATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAACATTCAAAA 2407 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || | || | ||||| || Sbjct 2406 GGAATCAACCCTCCATTTGGTACTTAGACTCCG 2374 Score = 113 bits (124), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || ||||| ||||| || || || ||| |||| ||||| | Sbjct 2130 TTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCAGACACCAT 2071 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||| ||||| |||||||| || || || |||||||| Sbjct 2070 TGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAACAAAGACT 2011 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| ||||| || || || ||||||||||| | || | | ||||||||| |||| || Sbjct 2010 TATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAACATCCAAAA 1951 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| |||||||| || | || | |||||| || Sbjct 1950 AGAATCTACTCTCCATTTAGTCCTCAGACTTAGA 1917 >seq322 Length=112280 Score = 114 bits (126), Expect = 3e-20 Identities = 156/214 (73%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || ||||| || || || ||||| ||| |||||||||| | Sbjct 11241 TTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCTGACACCAT 11300 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 |||| || ||| | ||| || ||||| |||||||| || || || ||||||| Sbjct 11301 CGAAAACGTTAAAACCAAA-ATCCAAGACAAAGAAGGTATCCCACCCGATCAACAAAGAC 11359 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 |||| || || || || || ||||||||||| | ||||| |||| |||||| |||| | Sbjct 11360 TTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAACATCCAAA 11419 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| || ||||| || | || | ||||| || Sbjct 11420 AAGAATCAACTCTCCATTTAGTCCTCAGACTCCG 11453 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || | || || ||||| || || || ||||| ||| ||||||| || | Sbjct 11014 TTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCTGATACCATT 11073 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| || || ||||| |||||||| || || ||| ||||||||| Sbjct 11074 GAAAATGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAACAAAGACTT 11133 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 || || || || || || || |||||||| | ||| | | || |||||| |||| ||| Sbjct 11134 ATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATCCAAAAA 11193 Query 206359 GAGTCTACTCTTCA 206372 || ||||| ||||| Sbjct 11194 GAATCTACCCTTCA 11207 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || ||||| || || || ||||| ||| | |||||||| | Sbjct 11925 TTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCTGACACCAT 11984 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||| ||||| || ||||| || || || |||||||| Sbjct 11985 TGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAACAAAGACT 12044 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || || || ||||| ||||||||||| | || | | || |||||| |||| || Sbjct 12045 TATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAACATCCAAAA 12104 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| || ||||| || | || | |||||| || Sbjct 12105 AGAATCAACTCTCCATTTAGTCCTCAGACTTAGA 12138 >seq540 Length=89862 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||| || ||||| ||| |||||||||| | ||| || ||| Sbjct 84111 ACCGGTAAAACTATCACATTAGAAGTTGAAGGTTCTGACACCATTGAAAATGTCAAGACC 84170 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| |||||||| || || ||| |||||||||||||| ||||| || Sbjct 84171 AAAATCCAAGATAAAGAAGGTATCCCACCCGACCAACAAAGACTTATCTTTGCCGGTAAA 84230 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | || | | ||||| ||| |||| || || || ||||| || Sbjct 84231 CAATTGGAAGATGGCCGTACCCTCTCTGATTATAACATCCAAAAGGAATCAACTCTCCAT 84290 Query 206374 CTTGTTTTGAGACT 206387 | ||| | ||||| Sbjct 84291 TTAGTTCTCAGACT 84304 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| || ||||| ||| |||||||||| | ||| Sbjct 84330 AAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCTGACACCATTGAAAAT 84389 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| |||||||| || || || ||||||||||| || Sbjct 84390 GTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTTATTTTT 84449 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||||||| | || | | ||||||||| |||| ||||| || Sbjct 84450 GCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAACATCCAAAAAGAATCA 84509 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 || || || || ||| | ||| Sbjct 84510 ACCCTCCATCTCGTTCTTAGA 84530 Score = 105 bits (116), Expect = 2e-17 Identities = 152/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 206163 TAAAATGTACCAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGG 206221 ||||||| || || ||||| ||| || | || |||||||| ||||| || ||||| | Sbjct 83627 TAAAATG---CAAAT-TTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAGTTG 83682 Query 206222 AAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGC 206281 || |||||||||| | ||| || ||| || || ||||| |||||||| || | Sbjct 83683 AAGGTTCTGACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCAC 83742 Query 206282 CGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCG 206341 | ||| |||||||| ||||| ||||| || || ||||||||||| | || | | | Sbjct 83743 CCGACCAACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTG 83802 Query 206342 ATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||| ||| |||| || || || || || || Sbjct 83803 ATTATAACATCCAAAAGGAATCAACCCTCCA 83833 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| || ||||| || | |||||||| | ||| Sbjct 83874 AAAACCTTGACCGGTAAAACAATCACATTAGAAGTTGAGGGCTCTGACACCATTGAAAAC 83933 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || || ||||||||||| || Sbjct 83934 GTCAAGACCAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTTATTTTT 83993 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||||||| | || | | ||||| ||| |||| ||||| || Sbjct 83994 GCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAACATCCAAAAAGAATCA 84053 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| | || | |||||| || Sbjct 84054 ACCCTTCATTTAGTCCTCAGACTTAGA 84080 >seq391 Length=66319 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206196 AGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 ||| || ||||| ||| | ||||| || | || ||||| ||||| || ||| || Sbjct 37410 AGGTAAGACGATTACTCTCGAAGTAGAGGGATCAGACACCATCGAAAACGTCAAGGCTAA 37351 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 || ||||| |||||||| || || || |||||||||||||| || || || || Sbjct 37350 AATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACA 37291 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 || |||||||| | ||||| ||||||||| |||| || || || || || || | Sbjct 37290 ATTAGAAGATGGTCGTACTTTACAAGATTACAACATCCAAAAGGAATCAACCCTCCATTT 37231 Query 206376 TGTTTTGAGACTTCG 206390 ||| | ||||| || Sbjct 37230 AGTTCTCAGACTCCG 37216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181703085477854