Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq386 161 1e-34 seq82 91.5 1e-13 seq3281 86.0 6e-12 >seq386 Length=121086 Score = 161 bits (178), Expect = 1e-34 Identities = 381/569 (67%), Gaps = 36/569 (6%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| | |||||||| ||| ||||| | || |||||| || | || ||||| Sbjct 3727 TTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAA 3668 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||||||| || || |||||| ||| || ||||||||||| |||||||| ||||||||| Sbjct 3667 CTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATC 3608 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| | || || ||| | |||||||||||||||||| || | || ||| | Sbjct 3607 GCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGAT 3548 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || ||||| ||| | |||||| |||||| ||| ||| | Sbjct 3547 CTCGGGCCGGTCTATGGCTATCAGTGGCGCTCCTGG-----CCT-----GCGCCCG---- 3502 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGA--TCATTACTGACTTGAAGAAGT 142540 || | || | ||||||||||| || | || | | || | ||| | Sbjct 3501 ------ACGGCCG-GCATATCGATCAGAT--TGCGAATCTCGTCAGTGCGATAAAGCAAA 3451 Query 142541 CTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGG 142600 ||| |||| || |||| ||||| |||| ||||| || || ||||| || |||| Sbjct 3450 ATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTCGATGAAATGG 3391 Query 142601 CACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCAT 142660 | || || || || ||| ||||||| ||| |||| | ||| | | | || || | Sbjct 3390 CGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGG--CCGACGGAAAG-CTTTCCT 3334 Query 142661 GCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGT 142720 ||||||| || ||||| || || || || |||||||| |||||||| || || || | Sbjct 3333 GCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCT 3274 Query 142721 ACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTTC 142776 | || || || || |||| || | ||| | | |||||| | | || || ||| Sbjct 3273 ATGCCCTGCTGAC---CCTCA-TGGTGGCGCAGGTCACGGGTCTGCAGCCGGGTGATTTC 3218 Query 142777 GTCCACACCTTCGGCAATTCGCACATCTA 142805 || ||||| | ||| || |||| |||| Sbjct 3217 GTTCACACGCTGGGCGATGCGCATCTCTA 3189 >seq82 Length=463168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 148837 TTCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGCGATGACATCAAG 148896 ||||||||||| || || ||||| |||| ||| | || ||||||||| Sbjct 392929 TTCATCGAGCGCATCGAGCGCCTTGAGGAAGAAAAGACCACGCTTCAGGACGACATCAAG 392988 Query 148897 GACGTCTACGGC-GATGCCAAAGGAAATGGCTTCGACACCAAGATCTTGAAGAAGGTCAT 148955 || || | ||| || ||||| || |||| ||||||||||||| | | | || | Sbjct 392989 GAAGT-GATGGCGGAAGCCAAGGGCCGCGGCTACGACACCAAGATCATCCGCACGATCGT 393047 Query 148956 CAACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCAATCCTCGATACGTA 149015 | | | ||||||||||||| | | ||||||| |||||||||||| |||||||| ||| Sbjct 393048 CCGCCTGCGCAAGAAGGATGCGAACGAGCGCAAGGAAGAGGAAGCGATCCTCGAGCTGTA 393107 Query 149016 TCTCGCTGCTCTCGGCATGATC 149037 | || ||||||||| || Sbjct 393108 CATGAACGCCCTCGGCATGGTC 393129 >seq3281 Length=2714 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 || || || ||||||||| | ||||| || |||||||||| || || |||| || Sbjct 1682 ATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAA 1741 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 || || ||| | || || || ||| |||||| | ||||| | | || || || || Sbjct 1742 AAACTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAAT 1801 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 || || || | | |||| || |||||||||||||| |||||||||| || || Sbjct 1802 ATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGT 1861 Query 142420 AACCTCGGACCTGTCTACGG 142439 |||| || ||||| || || Sbjct 1862 GACCTGGGCCCTGTTTATGG 1881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500450563990240