Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq3563 118 3e-22 seq7157 114 3e-21 seq385 109 1e-19 seq1617 91.5 4e-14 >seq3563 Length=1830 Score = 118 bits (130), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| | |||| | |||||||||||||| ||||| || | | ||| | | ||| || Sbjct 1400 GCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTCC---CA 1344 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336 || ||| ||||||||| |||||| ||| | |||| |||||||||||||| | | Sbjct 1343 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACC 1284 Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTT 396 |||||| ||||| | ||| ||||| || ||| ||||||||||| ||||| || ||| Sbjct 1283 GGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT 1224 Query 397 CTCCCCTGTCTGCTTATCCTTCCA 420 || || || ||||| || |||| Sbjct 1223 CTGGCCGGTTTGCTTGTCGGTCCA 1200 >seq7157 Length=721 Score = 114 bits (126), Expect = 3e-21 Identities = 215/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 215 CGGCCATTCAT---GCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCC 271 |||||||||| | | || ||||| || || |||||||| | || || | | ||| Sbjct 74 CGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC 133 Query 272 TGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTAC 331 |||| ||| || | || | |||||| | | | || ||| ||||| ||||| ||| Sbjct 134 ---CACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATAC 190 Query 332 TGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCT 391 | | |||||||| || | ||| ||||||| || ||||||||||| || || || Sbjct 191 TCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCC 250 Query 392 TTCTTCTCCCCTGTCTGCTTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCC 451 | || || || ||||||||||| |||||| |||| ||||| | | || | || Sbjct 251 TGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTT 310 Query 452 ACGCCGTTGCCGTTCGGCAGCGT-GCGGAATTCTGGATCGTTGCCTAAGTTGCCAATGAT 510 ||| ||||||||||||| | || ||||| ||| || ||| ||| |||||| | || Sbjct 311 ACGGCGTTGCCGTTCGG-GGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAG 369 Query 511 TTCTACTTTGTT 522 |||||||| Sbjct 370 AATCACTTTGTT 381 >seq385 Length=624889 Score = 109 bits (120), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 233 ACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGC 292 |||||||| || | ||||| ||| ||| | |||||||||||||||||| || |||||| Sbjct 29934 ACGATTTCCGTCGAATAGCGGTCATTGCCGGTCTGGTCCTGCCACTTGCGGGTCTGCAGC 29875 Query 293 GCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGC 352 |||||||| | | ||||| |||| || |||||||| || | | ||||| Sbjct 29874 GCGCCTTCCAGATAAACCTTCATGCCCTTCTTGAGGTACTGTTCAGCCACCTTGGCCAGG 29815 Query 353 TT-TC--CGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGC 409 || || ||| ||||| |||| ||||||||| || ||||| || ||| || | | | Sbjct 29814 TTGTCGTTGAAAATGACGACGCTGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGCTGTTC 29755 Query 410 TTATCCTTCCAGGTTTCAGACGTGGCAAT 438 || || |||| |||| || |||||||| Sbjct 29754 TTGTCGCGCCAGCTTTCCGAGGTGGCAAT 29726 >seq1617 Length=5386 Score = 91.5 bits (100), Expect = 4e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 296 CCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTT 355 ||||| ||| | |||| ||| |||||||| || | || || | ||| || ||||| Sbjct 4745 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 4804 Query 356 CCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCC 415 ||||| | |||||||| |||||||| || | || | ||||||||||||| || || Sbjct 4805 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 4864 Query 416 TTCCAGGTTTCAGACGTGGC 435 ||||||||| |||||||| Sbjct 4865 CGCCAGGTTTCCGACGTGGC 4884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135389100232044