Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq1335 2511 0.0 seq6381 123 1e-23 >seq1335 Length=14169 Score = 2511 bits (2784), Expect = 0.0 Identities = 1602/1742 (92%), Gaps = 0/1742 (0%) Strand=Plus/Minus Query 1778 ATCGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGA 1837 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 9214 ATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGA 9155 Query 1838 TGAACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGA 1897 ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 9154 TGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGA 9095 Query 1898 CATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTT 1957 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 9094 CATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTT 9035 Query 1958 TTCGAGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGA 2017 |||| ||||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct 9034 TTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGA 8975 Query 2018 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGC 2077 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 8974 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGC 8915 Query 2078 CGTTGCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACTTTCGTCGCGAT 2137 ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 8914 CGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGAT 8855 Query 2138 AGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 2197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8854 AGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 8795 Query 2198 CGTTCTCGTACTGTTTTCCCCATGCCAGGGCTTTGGCGTTAACTTCCGGGGCCACACCCG 2257 |||||||||||||||||||||| ||||| || || || ||||||||||| |||||||| | Sbjct 8794 CGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGG 8735 Query 2258 TGCAGACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTC 2317 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 8734 TGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTC 8675 Query 2318 CGGAGCGGGGTTTGGCTATCACGTTGTGAACTTCTGAAGCTGTGATGCCCCCGAGCCGTA 2377 | |||||||| || |||||||||||||||||||||||||| |||||| | |||||||||| Sbjct 8674 CTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTA 8615 Query 2378 ATTTTTGCCATGCATAATCTCCCTGCTCGACACCTCTCACGTCGATCCCGGTACGTTGTA 2437 |||| |||||||||| ||| ||||| |||||| |||||||||||||||||||||| || | Sbjct 8614 ATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCTGCA 8555 Query 2438 GGATAATTTCTGGTGTCATGCTGCCACCTTCTGCTCCGTGGCTTTCTGTTTCAGGAATCC 2497 ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 8554 GGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAATCC 8495 Query 2498 AAGAACCTTCTCTGCTTCGGCCTGGGACAGTTCTGACGACGCTCGAATGTAGCGGCGAAA 2557 |||| | ||| ||||||||||||| | |||||||||||| || ||||||| ||||||||| Sbjct 8494 AAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCGAAA 8435 Query 2558 TATCTGGGAACAGAGCGGCAAGAGGTCGTCGTCCCACGTTTTTTCCATGGAAGTAAGAAG 2617 ||||||||||||||||||||| | |||||| ||||| ||||| |||| || | || || Sbjct 8434 TATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGCAG 8375 Query 2618 GGCGTTAATTTCCGACATGGTCTCTTCGTTAACCGGGGTGATGTCGCGTTCCGGCTGACG 2677 | |||||| ||| |||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 8374 AGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGACG 8315 Query 2678 TTCTGTAGTATATGCGGTATTTTCGACAATGCGTTCGGCTTCATCCTTGTCATAGATACC 2737 ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 8314 TTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACC 8255 Query 2738 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGCCGTAACATCCGTTT 2797 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 8254 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTT 8195 Query 2798 GGGATGCGACTGCCACGGCCCCGTGATTTCTCTGCCTTCGCGAGTTTTGAATGGTGCGCG 2857 |||||||||||||||||| || |||||||||||||||||||| |||||||||||| |||| Sbjct 8194 GGGATGCGACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCG 8135 Query 2858 GCGGCATTCATCCATCCATTCGGTAACACAGATCGGATGATTACGGTCTTTGCGGTAAAT 2917 |||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| Sbjct 8134 GCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAAT 8075 Query 2918 CCGACATGTACAGGATTCATCGTCCTGCTCAAAGTCCATGCCATCAAACTGCTGGTTTTC 2977 ||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 8074 CCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTC 8015 Query 2978 GTTGATAATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 3037 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8014 ATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 7955 Query 3038 AGGGAAGGCGTAAATTTCTTTCGTCCATGGATTAAGGCCGTACTGGTTGGCAACGATCAG 3097 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 7954 AGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAG 7895 Query 3098 CAATGCGATGAACTGCGCATCGCTGGCATCACCTTTAAATGCAGTCTGGCGAAGAGTGGT 3157 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 7894 CAATGCGATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAGAGTGGT 7835 Query 3158 GATTAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCTGCCAG 3217 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 7834 GATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAG 7775 Query 3218 CGTTGCGAGAGCTGTACTCATCTGGTTTATACCTCTGAATCAATATAAATCTGGTGGCGG 3277 ||||||||| |||||||||||| | ||||||||||||||||||||| || ||| ||| | Sbjct 7774 CGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGATGGTGA 7715 Query 3278 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGTTCCTGAAAATCGACATCG 3337 ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 7714 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCAACATCG 7655 Query 3338 TCATCAAATGCACGGGCAATGGCTTTTTTGCTGGCTCCATGACGTTGCAGATTATCGATG 3397 |||||||||||||||| |||||||||||||||||| || ||||| | || ||||||| Sbjct 7654 TCATCAAATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGATCGATG 7595 Query 3398 CACAGCGATTCAAACAGGTGCTGGGGCAGACCTTTTTCCAGGTCGTCCGCCAGTTCAGTC 3457 || ||||||||||||| ||||||||||| ||||| |||| |||||| |||||||| | | Sbjct 7594 CAGAGCGATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGTTCTGCC 7535 Query 3458 TCATTTTCTTCACGGGCAATTTGCCGGTAGTCTCGTGCCCATGACTGCTCTTCAATGCGA 3517 || || ||||||||||| || ||| |||||| || ||||| ||| | |||| ||| Sbjct 7534 TCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCAAGACGA 7475 Query 3518 TC 3519 || Sbjct 7474 TC 7473 Score = 145 bits (160), Expect = 3e-30 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 60834 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 60893 ||||||||| |||||||||||| ||||||| || | ||| |||||||||||||| ||| Sbjct 10173 GCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGCAACTGGCACAA 10114 Query 60894 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 60953 || || || || |||| ||| | |||| || ||||||||||||||||||||||| ||| Sbjct 10113 GTCCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 10054 Query 60954 CAATGAGTAGCAGAT 60968 |||||||| |||||| Sbjct 10053 CAATGAGTGGCAGAT 10039 >seq6381 Length=773 Score = 123 bits (136), Expect = 1e-23 Identities = 138/177 (78%), Gaps = 13/177 (7%) Strand=Plus/Plus Query 28430 TGCGCCGCATCGTCGCCGTATTCCCGCATTAACAGAGACCGCAGCC--ACC-----TTA- 28481 ||||| | ||||||||||||||||||||||||| ||||| |||| || || Sbjct 407 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 466 Query 28482 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 28540 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 467 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 525 Query 28541 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACC 28597 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||| Sbjct 526 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACC 579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200493002365240