Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1819 96.9 3e-15 seq54 86.0 6e-12 seq540 82.4 7e-11 >seq1819 Length=3716 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/218 (71%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 ||||||||||| ||| |||| | || |||| || ||| || | || ||||| ||| | Sbjct 3663 ATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAA 3604 Query 47118 TCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGG-TGCAG---CTCGGACA 47173 |||| | |||||||||||||| || || | | ||| ||||| || || | Sbjct 3603 CTGATGTCACAGTATATTGAGTTTGTTGCAGA----CAGATGGCTGCAGGAACTGGGTTA 3548 Query 47174 -ACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGG 47232 ||| |||||| | | ||| ||||||||||| |||||| | | || || || | | Sbjct 3547 TACCAAAATATATCA-TGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAG 3489 Query 47233 GCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 ||||||||||||| || |||||||| || || || ||| Sbjct 3488 GCAAAACCAATTTCTTTGAGAAACGTGTGGGTGATTAT 3451 >seq54 Length=99412 Score = 86.0 bits (94), Expect = 6e-12 Identities = 196/295 (66%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA 148170 |||||||| || ||||| || | || | | |||| ||||| || | | || || Sbjct 89718 TAGATGCCATCAATGCTATCTTCCTTCATGGTGAGCAGGAAACAGGAGGATAGCTGTGGT 89659 Query 148171 ATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATC 148230 | ||||||| || |||||||| || | || || |||||| | |||| | | Sbjct 89658 TTAGGCGTTCCTGCATTAAAAAGGGTAGGGGTAGCATGTGTAAACCACTTTTCGGAGAGC 89599 Query 148231 ATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGC 148290 | | | || || | || || | ||| || || ||||||||| | || || ||| Sbjct 89598 AGGTGGTAGGTTTGGATGGCTGATGTGATATCTTCTTTGTGAATGCCTACGGCCACCCGC 89539 Query 148291 ATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTT 148350 |||||||| ||||| |||| ||| ||| || | | | |||||| |||||| || Sbjct 89538 ATGAGCATATGCTGCGGTCTTTCCACAATTTTACCATGTAGCTTGAGTAGATATGACCTT 89479 Query 148351 TCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 || | ||| || | |||||||| | |||||| ||||| | || ||| | |||| Sbjct 89478 TCTAAGGTCTTAAAGCCAAAGTAATCATAATCATAATCTCGATCATAAACAATGG 89424 >seq540 Length=89862 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||| |||||||| |||||||| || | |||||| |||||| Sbjct 84524 AACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTC 84465 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| | | || || | |||||||| || || || ||||||||||| Sbjct 84464 CAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTG 84405 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| || | | ||| | || || | || ||||| | || | ||||| Sbjct 84404 GATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATGGTTTT 84345 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| |||| ||||| | ||||| ||||| Sbjct 84344 ACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476564885306640