Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq982 123 2e-23 seq540 122 8e-23 seq322 122 8e-23 seq332 95.1 1e-14 >seq982 Length=41121 Score = 123 bits (136), Expect = 2e-23 Identities = 176/246 (72%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 25156 TAGTTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCAC 25215 |||||| ||||||||| ||||| | |||||||| || || ||||| ||| | ||||| Sbjct 2836 TAGTTT--AATTAAACA---TGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCAC 2782 Query 25216 GATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGA 25275 | ||||| |||| || || || || | || || || ||| || ||||| Sbjct 2781 CTTGGAAGTTGAAGGTTCTGACACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGA 2722 Query 25276 GGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 25335 ||||| || || ||||| |||||||| |||| || ||| |||||| | ||||||| | | Sbjct 2721 AGGTATCCCACCTGATCAACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCG 2662 Query 25336 AAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAG 25395 | | | ||| ||||| || ||||||||||| || | |||||||| | ||| | || Sbjct 2661 TACTTTATCCGACTACAACATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAG 2602 Query 25396 AGGAGG 25401 ||| || Sbjct 2601 AGGTGG 2596 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || ||||| ||| | ||||| | || || |||| Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || ||||| ||||| || |||||||| Sbjct 2078 GACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2019 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| || || |||||| | ||||||| | | | || |||||||| Sbjct 2018 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 1959 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || ||||||||||| || | |||||||| | ||| | ||||| ||||| Sbjct 1958 ATCCAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAA 1909 >seq540 Length=89862 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| || | | Sbjct 83859 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACAATCACATTAGAAGTTGAGGGCTCT 83918 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || |||||||| ||||| || |||||||| Sbjct 83919 GACACCATTGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 83978 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | ||| |||||| | ||||||| | | | || ||||| || Sbjct 83979 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAAC 84038 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| ||| |||||||||| | ||| | ||||| || Sbjct 84039 ATCCAAAAAGAATCAACCCTTCATTTAGTCCTCAGACTTAGAGGTGG 84085 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| |||| Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || ||||| |||||||| ||||| || |||||||| Sbjct 84375 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAA 84434 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | ||| |||||| | ||||||| | | | || |||||||| Sbjct 84435 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 84494 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || ||||||||||| ||| | ||| | || | ||||| ||||| || || Sbjct 84495 ATCCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATTAAGAGGTGGTAA 84544 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | |||||||| || |||||||||||| | ||||| | ||||| |||| Sbjct 83628 AAAATGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAGTTGAAGGT 83687 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || || || | || || ||||| |||||||| ||||| || ||||| Sbjct 83688 TCTGACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGAC 83747 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || |||||||| || | | ||| |||||| | ||||||| | | | || ||||| Sbjct 83748 CAACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTAT 83807 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||| ||||| ||| | ||||| || | ||||| ||||| || Sbjct 83808 AACATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGG 83857 >seq322 Length=112280 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || || ||||| ||| | ||||| | ||||| |||| Sbjct 11689 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCT 11748 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||||| || ||||| ||||| || |||||||| Sbjct 11749 GATACCATTGAAAACGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11808 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||||| | || |||||| | ||||||| | | | | || || ||||| Sbjct 11809 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 11868 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| || | ||||| || | ||||| ||||| || Sbjct 11869 ATCCAAAAAGAATCAACACTCCATTTGGTACTTAGATTAAGAGGTGG 11915 Score = 118 bits (130), Expect = 9e-22 Identities = 169/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 25166 TTAA-ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGT 25224 |||| ||| |||||| | |||||||| || || ||||| ||| | || || | ||||| Sbjct 10995 TTAATACATAATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGT 11054 Query 25225 CGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACC 25284 |||| ||||| || || | || || ||||| || ||||| ||||| || Sbjct 11055 TGAAGGTTCTGATACCATTGAAAATGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCC 11114 Query 25285 GCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAG 25344 ||||| || |||||||| |||| | || |||||| | ||||||| | | | | || Sbjct 11115 ACCCGACCAACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTC 11174 Query 25345 CGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || ||||||||||| ||| |||||||||| | | || |||||||| Sbjct 11175 TGACTACAACATCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTTTAAGAGGAGG 11231 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || ||||| ||| | || || | ||||| |||| Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || ||||| ||||| || |||||||| Sbjct 11293 GACACCATCGAAAACGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11352 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || |||||| | ||||||| | | | | | ||| ||||| Sbjct 11353 CAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 11412 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||||||||| || | |||||||| Sbjct 11413 ATCCAAAAAGAATCAACTCTCCATTTAGT 11441 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || || ||||| ||| | || || | ||||| |||| Sbjct 11461 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11520 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | ||||| || || || ||||| ||||| || ||||| || Sbjct 11521 GATACCATTGAGAATGTAAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 11580 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||||| | || |||||| | ||||| | | | | || || ||||| Sbjct 11581 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGACTACAAC 11640 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| || | |||||||| | ||| | ||||| || Sbjct 11641 ATCCAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTTAGAGGTGG 11687 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || ||||| ||| | || || | ||||| |||| | Sbjct 11917 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCT 11976 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || ||||| || ||||| || |||||||| Sbjct 11977 GACACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 12036 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || || ||| | ||||||| | | | || || ||||| Sbjct 12037 CAAAGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAAC 12096 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || ||||||||||| || | |||||||| | ||| | ||||| ||||| Sbjct 12097 ATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAA 12146 >seq332 Length=17232 Score = 95.1 bits (104), Expect = 1e-14 Identities = 313/474 (66%), Gaps = 16/474 (3%) Strand=Plus/Minus Query 137955 TTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATATAGACGGCCATAGC 138014 ||| ||||||||||| ||||||||| |||||||| || || | ||| ||||| | ||| Sbjct 4891 TTTCAAATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCCAAATAAACGGCAAAAGC 4832 Query 138015 TCCTTTTCTTTTACCGCC---TTGATCCACATGACGCAACATACTATTAAAGACACGCAA 138071 |||||||| || || || |||||| |||| ||| || |||||||||||| | Sbjct 4831 ACCTTTTCTCTTGCCTCCACCTTGATCTACATAACGAGCGGTATCATTAAAGACACG--A 4774 Query 138072 TGCA--GGACCTAAGCCCGCCGCTGTTCCGTTCGTAGATTTAATTGTACTATTGGCAGCA 138129 ||| ||| | || || | ||||| || ||| ||| |||| |||||| Sbjct 4773 AGCATTGGAACCAATCCATTGGAAGTTCCATTGGTACCACGAATATAACTACGAGCAGCA 4714 Query 138130 CGAAT-TTGAGTTACGTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATC 138188 ||||| ||| | || | || || || || | || || || | |||| | Sbjct 4713 CGAATCTTGTG-AACAGCAATACCAATACCACCAGCAGACTTTGAAATTAAGGCAGTTTG 4655 Query 138189 GTTGAGAGTTCTATAGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGA 138248 || || || || || || | || || || |||| || | | | |||| || Sbjct 4654 TTTTAGGGTATCGTAAATTCCCTCGATACTATCATCCTTCATTTGTACCAAGAAACAAGA 4595 Query 138249 CGACATTTGAGGCATTTTCA-TGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACA 138307 ||||||||||| || | | ||||| ||| || || ||| |||| || ||||||| Sbjct 4594 AGACATTTGAGG-ATAAGGAGTACCAGCATTGAAAAGTGTAGGAGTAGCATGAGTAAACA 4536 Query 138308 TTTTCGA-GCGCATCAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATC 138366 |||| | | || ||| ||| | ||| || | || ||||| ||||||||||| Sbjct 4535 ATTTCAATGATAATTTATC-ATAGGTAAGGATAACATTATCAATATCCTCACCATGAATA 4477 Query 138367 TGAAGAGCGACACGCATCAGCATGTGTTGAGGTC--TCT-CGACGATAACATTA 138417 | || |||||||||| ||| |||||||| | ||| | | |||| ||||| Sbjct 4476 CCCAAAGAAACACGCATCAACATATGTTGAGGACGTTCTACAATGATACCATTA 4423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445051147951680