Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq322 114 1e-20 seq982 113 4e-20 seq391 93.3 3e-14 >seq322 Length=112280 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || || ||||| || || || |||||| | ||| ||| Sbjct 11004 AATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTC 11063 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || || ||||| ||||||||||| | || || || Sbjct 11064 TGATACCATTGAAAATGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGACCA 11123 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||||| ||||||| ||| || ||||||||||||||| | ||| | || ||||| Sbjct 11124 ACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAA 11183 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| |||||||||||||| || ||||||||| | | ||| ||||||| Sbjct 11184 CATCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTTTAAGAGGAGG 11231 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| || || ||||| || || || || ||| ||||| |||| Sbjct 11689 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCT 11748 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||||| ||||||||||| | || |||||| Sbjct 11749 GATACCATTGAAAACGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11808 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| || |||| ||| || ||||||||||||||| | ||| | || |||||| Sbjct 11809 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 11868 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| ||||| ||||| ||| | || ||| |||| || Sbjct 11869 ATCCAAAAAGAATCAACACTCCATTTGGTACTTAGATTAAGAGGTGG 11915 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || ||||| || || || |||||| | ||| ||| Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || ||| ||||| ||||||||||| | || |||||| Sbjct 11293 GACACCATCGAAAACGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11352 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| ||||||| ||| || |||||||| |||||| | ||| | ||| |||||| Sbjct 11353 CAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 11412 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||||||||| || || |||||||| Sbjct 11413 ATCCAAAAAGAATCAACTCTCCATTTAGT 11441 >seq982 Length=41121 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 106254 TTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAA 106313 ||||| |||||||||||||| || || ||||| || || || || ||| ||||| ||| Sbjct 2828 TTAAACATGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAA 2769 Query 106314 CCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTT 106373 || | ||| | || || || ||| ||||||||||| | || | Sbjct 2768 GGTTCTGACACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCACCT 2709 Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 ||||||||||| ||||||| || || ||||||||||||||| | ||| | ||| Sbjct 2708 GATCAACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGAC 2649 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGT 106468 |||||||| ||||||||||| || || |||||||| Sbjct 2648 TACAACATCCAAAAAGAATCAACTCTCCATTTAGT 2614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || ||||| || || || || ||| | || |||| Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || || || || ||||||||||| | || |||||| Sbjct 2078 GACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2019 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| ||||||| || || |||||||| |||||| | || | ||||||||| Sbjct 2018 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 1959 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||||||||| || |||||||| Sbjct 1958 ATCCAAAAAGAATCTACTCTCCATTTAGT 1930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || || |||||||| ||||| | ||| || |||||||| ||| Sbjct 2273 GACAAAGAAGGTATCCCACCCGACCAACAAAGACTTATCTTTGCCGGTAAACAATTGGAA 2214 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| | ||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct 2213 GATGGTCGTACTTTATCCGACTACAACATCCAAAAGGAATCAACCCTCCATTTGGTACTT 2154 Query 106473 AGGTTACGAGGAGG 106486 || ||| |||| || Sbjct 2153 AGATTAAGAGGTGG 2140 >seq391 Length=66319 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | ||| ||||||||||| ||||| | ||| || |||||||||||| Sbjct 37343 GACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAATTAGAA 37284 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGT 106468 ||| | ||| | ||||||||||| ||||| ||||| || || |||||||| Sbjct 37283 GATGGTCGTACTTTACAAGATTACAACATCCAAAAGGAATCAACCCTCCATTTAGT 37228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402291481030592