Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3596 147 3e-29 seq5201 122 1e-21 >seq3596 Length=2072 Score = 147 bits (162), Expect = 3e-29 Identities = 278/403 (69%), Gaps = 12/403 (3%) Strand=Plus/Minus Query 1455875 CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGG 1455934 |||||| |||||||| || | || || |||||| || || || || ||||| || Sbjct 486 CGAGCGTCATTTCATTTCTCATATACTTGCTTTTTTT-GCTGCAAGTGACGGCATTGTAA 428 Query 1455935 CCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTT 1455994 || ||||| || | ||| |||| || || || | || || || |||| |||| Sbjct 427 ATGAAAACCTTGCAGTGAACTTCATGAGCGAAGTACAGCTTCCCGAAGCCCGTTGTTTTT 368 Query 1455995 ACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACA 1456054 | || ||||||||| || ||||||||||||||||||||||| |||| |||||||| | Sbjct 367 ATGGCTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATA 308 Query 1456055 CCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGT 1456114 |||| | || || || | || || ||| || || | ||| | || ||||| || | Sbjct 307 CCTATATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCCGTAGAGACGGTTCCTT 248 Query 1456115 CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTT 1456174 || | |||||| || || ||||| || ||||| |||||| || | || Sbjct 247 GTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGAT------TGAGGGC--GGAAATTT 196 Query 1456175 TGCCGAGCGGCTCGTCGGCTTT-GCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCT 1456232 |||||| || | || |||||| ||||| || || ||||| || ||| || || |||| Sbjct 195 TGCCGAACGTTTGGT-GGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCT 137 Query 1456233 GCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | | ||||| ||| | || || | ||||| ||||| || || Sbjct 136 GTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCT 94 >seq5201 Length=2668 Score = 122 bits (134), Expect = 1e-21 Identities = 269/398 (68%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 2133423 CTGGGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCC 2133482 || |||||||| || | ||||||||||| || ||||| || | || | ||||||||| Sbjct 2268 CTCGGCGAGGACGTTTCCCGCGAGGGCCTGCTCGACACGCCAAAACGTGCCGCCAAGGCC 2327 Query 2133483 ATGGTGGAGCGCACGCGCGGCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTC 2133542 ||| | | | | ||||| || |||||| | || | | | ||| ||| | Sbjct 2328 ATGCAGTATCTCTGCCGCGGTTATGAACAGACCCTCGAAGAAGTCACCAACGGTGCCTTG 2387 Query 2133543 TTTGACGAGG-CGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTG 2133601 || | | | | | ||| |||||| ||| || || || || | ||| |||| Sbjct 2388 TTCAGCTCTGACAACAG-CGAAATGGTGCTGGTCAAGGACATCGAGTTGTACTCGCTGTG 2446 Query 2133602 CGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCG-GGCA 2133660 ||| |||||||||||||| || ||||||||||| ||||| | || | |||| | |||| Sbjct 2447 CGAACACCACCTGCTGCCGTTCATCGGCAAGGCTCACGTCGCGTATAT-CCCGAGCGGCA 2505 Query 2133661 AGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAG 2133720 | | | || ||| ||| || |||| |||||||| |||| | || |||| | || Sbjct 2506 AAGTGCTGGGCCTGTCGAAGGTCGCGCGTATCGTCGATATGTATGCCCGCCGCCTGCAGA 2565 Query 2133721 TACAGGAGGCACTCACGCGCCAGATCGCCGAGAGCGTGAGCCAGGTTACGGGCGCGCGCG 2133780 | ||||| |||| |||||||||||||| || ||||| || ||||| | | Sbjct 2566 TCCAGGAAAACCTCAGCCGCCAGATCGCCGATGCGGTCCAGCAGGTCACCGGCGCCCTGG 2625 Query 2133781 GCGTCGGCGTCGTCCTCGAGGGCCTGCACATGTGCGTG 2133818 |||| | || || |||||| | |||||||||| || Sbjct 2626 GCGTTGCAGTGGTGATCGAGGCCAAGCACATGTGCATG 2663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177061383411388