Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq654 122 3e-23 seq2590 107 7e-19 >seq654 Length=148201 Score = 122 bits (134), Expect = 3e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 4517 AAGGCCAAGCTCCTGATCGTGGACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAAGAC 4576 ||||||||||| | |||| ||||||| || ||||| ||||| | |||| || Sbjct 11382 AAGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGAT 11441 Query 4577 CTCCTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTG 4636 ||| || ||||| || || || | ||||||||||| | |||||||||||| | Sbjct 11442 CTCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATA 11501 Query 4637 GCCGGGGCTGGATTCTTCACCAAGCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGC 4696 |||| | || ||||||||| | || || | || |||||||| | ||| |||||||| Sbjct 11502 TCCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCCTGCTCAGCGAAATCCACCGG 11561 Query 4697 CAGGCCCGCGACAACCCCATCATTGAGATGTCGCGCATCGTCCGCGAGGG 4746 ||||| ||||||||||| ||| | || ||| | ||| |||||||| Sbjct 11562 CAGGCGCGCGACAACCCGATCCTGCGCCTGGCGCTCGACGTGCGCGAGGG 11611 Score = 91.5 bits (100), Expect = 5e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4173 TTTTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTG 4232 |||| || || ||||| |||||||| || |||||||| || ||||||||| | |||||| Sbjct 11122 TTTTTCGGCTTTTCGGCTATGCCGGTACCGGCAAGACGACGCTGGCCCGCTATTTCGCTG 11181 Query 4233 AGAACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCT 4290 || | | ||||| |||| ||||||||| |||||||||||||| | ||||| Sbjct 11182 AGCATATTGACGGCGACGTGCAGTTCGCCGCTTTCACCGGCAAGGCCGCGCAGGTCCT 11239 >seq2590 Length=2778 Score = 107 bits (118), Expect = 7e-19 Identities = 230/335 (69%), Gaps = 24/335 (7%) Strand=Plus/Plus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCAC--CACGGACTGCGCCTGCT 36770 |||||||||| || ||||| ||||||| ||||||| | | | ||| | ||| || Sbjct 528 TCGGCCCTGCCGGTACCGGCAAGACCTACCTGGCCGTGGCCTGCGCGGTCGATGCC--CT 585 Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACT----CGCCCCGCCGTCGAGGCCGAGG 36826 |||| | || | | ||||| | || | || || || || || || |||| | Sbjct 586 GGAGCGCGAGCAGGT---GCGACGCATCCTG-CTGGTGCGTCCGGCGGTGGAAGCCGGCG 641 Query 36827 AGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGA 36886 ||||||| |||| ||||||||| | | | ||||||| | ||||||||| |||| Sbjct 642 AGAAGCTGGGCTTTTTGCCCGGCGACCTGGCCCAGAAGATCGACCCGTACCTGCGCCCGC 701 Query 36887 TGCTGGACGCGGTGATCGACCTGGTTGGCC-CGACGA--TGGCCAAGCGCCTGCAGGAGA 36943 | |||||| | ||| || | ||| ||| | ||||||||| || ||| Sbjct 702 TCTACGACGCGCTCTACGAGATGCTCGGCTTCGAATACGTGGCCAAGC---TGATCGAG- 757 Query 36944 CCCGCCAGCT---CGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACA 37000 |||||| | ||||||||||||||||||||||||||| ||||| || | ||| ||| Sbjct 758 --CGCCAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGTGGCCGTACGCTGAACAACA 815 Query 37001 CGTTCCTCATCGCCGACGAGATGCAGAACGCCACC 37035 ||| |||| |||||| | |||||| ||||| Sbjct 816 GCTTCATCATTCTCGACGAAAGCCAGAACACCACC 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180780109517412