Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_026608.1 Length=42093 Score E Sequences producing significant alignments: (Bits) Value seq1422 89.7 1e-13 >seq1422 Length=30787 Score = 89.7 bits (98), Expect = 1e-13 Identities = 206/307 (67%), Gaps = 5/307 (2%) Strand=Plus/Plus Query 38810 CGGCGAATACTTCGATTGGTATTACTTGAACGCA-GCCGACCGGGCCGCGCAAATCCGCA 38868 ||||||| || || |||||||| | | || | || || || |||||| |||| Sbjct 26623 CGGCGAAGGTTTTGACTGGTATTA-TGCATCGGATGCGGATCGAACCGCGCGGCGGCGCA 26681 Query 38869 CGCCTATTACCGACGGTGCCTACGGTAAACCATGGGTATTCCGCAACAAAGACTTCCGTT 38928 |||| || |||||||| | || || | ||||| | |||| |||| ||| || Sbjct 26682 CGCCGATCACCGACGGATCG---GGCAAGGCGTGGGTCTACCGCTACAAGGACATCGAGG 26738 Query 38929 CTTGGTGGAATAACTACCATTACAACCGCCCCGGCTACGTCGAAGACGCTTCGCCGACGG 38988 | |||||||| ||| |||||||||||| ||| |||||| ||| | |||| Sbjct 26739 CCTGGTGGAAAAACCCGCATTACAACCGCAAGGGCGGCGTCGAGAGCGCCAATGCCACGG 26798 Query 38989 GTTGGGTTCCTAATTCAAAGCCGATTTGGTTTACTGAATTCGGCTTTCCTGCGGTCGATA 39048 ||| |||| |||||||| ||| | || ||| | |||| ||| || ||||| | Sbjct 26799 CGTGGCAGCCTATGGGTAAGCCGATCTGGCTGACGGAACTGGGCTGTCCGGCAGTCGACA 26858 Query 39049 AAGGCACCAATCAACCAAACGTTTTCTACGACCCTAAGTCTTCCGAAAGCGCCTACCCCT 39108 | ||| ||||||| || || || || ||| | ||||| ||||| | || | || | Sbjct 26859 AGGGCCCCAATCAGCCCAATGTCTTTCCCGATGCCAAGTCCTCCGAGGGGGCGTTTCCGT 26918 Query 39109 ACTTTTC 39115 | ||||| Sbjct 26919 ATTTTTC 26925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134563576448340