Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_026611.1 Length=43129 Score E Sequences producing significant alignments: (Bits) Value seq1335 302 1e-77 seq2982 93.3 1e-14 >seq1335 Length=14169 Score = 302 bits (334), Expect = 1e-77 Identities = 535/775 (69%), Gaps = 10/775 (1%) Strand=Plus/Minus Query 34570 AACATAAAACCCTCTACGTCCGAGAATTCTGACGAATCCTCAGACGGCTGTCGGAATGAG 34629 || |||||||| | | ||||||||||||||||||||||||| ||| | | | ||| | Sbjct 3644 AATATAAAACCTTTTTCGTCCGAGAATTCTGACGAATCCTCTGAC--CAGCCAGAAAACG 3587 Query 34630 AT--TCAGATCACTCGGCCAGATGCTGCAATTCAACGCGGAACCAAGTGGGGAACATCCG 34687 || || | | || |||||||||||||| |||| | ||||||||| ||| | | Sbjct 3586 ATCTTCCTGTGATGAAACCGGATGCTGCAATTCAGAGCGGCAGCAAGTGGGGGACAGCAG 3527 Query 34688 AAGACCTGCGTTGCGCTGAATGGCTGTTCTCAGTCGTGCAAAGCATCTCCTCAACCGCCA 34747 |||||||| ||| || ||| |||| | ||| | | |||| | || | |||| Sbjct 3526 AAGACCTGACCGCCGCAGAGTGGATGTTTGACATGGTGAAGACCATCGCGCCATCAGCCA 3467 Query 34748 AGAAGCCAAACTACGCATCATGGGCTAACGACATCCGCCTGATGCGAGAGAGCGACGGAC 34807 || || || | ||| ||||||||||| |||||||||||||| || | || |||| Sbjct 3466 GAAAACCGAATTTTGCAGGGTGGGCTAACGATATCCGCCTGATGCGTGAACGTGATGGAC 3407 Query 34808 GCACTCACAAGGAGATCGCCACGCTGTTCAAGTGGGCCTGCGATGACGACTTCTGGAAGG 34867 | | ||| || || | ||||||| ||||| ||| | ||| |||||||| | Sbjct 3406 GTAACCACCGCGACATGTGCGTGCTGTTCCGCTGGGCATGCCAGGACAACTTCTGGTCCG 3347 Query 34868 GGAATGTTCTTTGCCCAGCCACGCTGCGCAAGAAATGGACTCAGCTAGATATCAAGCGCC 34927 | || || || | || || | || ||| | || ||||| ||||| || ||||| || Sbjct 3346 GTAACGTGCTGAGTCCGGCTAAACTCCGCGACAAGTGGACCCAGCTCGAAATCAACCGTA 3287 Query 34928 AAAA---ACTGGCATCAGGTAAACCCGCTGAAAGGCCAAAGGTCGACCTGACTAACACTG 34984 | || || ||| | | | || |||| ||||| |||||||||| ||||||| Sbjct 3286 ACAAGCAACAGGCTGGCGTGACAGCCA--GAAAA-CCAAAACTCGACCTGACAAACACTG 3230 Query 34985 ACTGGATTTACGGAGTTCAGCTATGAGGAGCGTTTCAGAGCAGATACAAAAATTCAGCCG 35044 ||||||||||||| || | ||||| | | | | | ||||| || || ||| Sbjct 3229 ACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCACAGATGGTTAACTTTGACCG 3170 Query 35045 GGGGCAGATTCAGCGTGTGGCCAGCAACCTACCTGAGCAGCGCTGTGAAGCGCAGCAGGT 35104 | |||||| | || | |||| |||| | || || ||| | ||| || |||||| Sbjct 3169 TGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAGTACGACGAAAAGCCGCAGGT 3110 Query 35105 TGAGCAAGTAGCCCATGTTATCAATGGGGTATTTACCCAGCTTCTCGCGGTATTCCCTGC 35164 | || ||||| || | ||||| || || || | |||| | || || ||||| || Sbjct 3109 ACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTTTCCCGGC 3050 Query 35165 CAGCCTGGCCAACCGTGACCAGCGCGAGATAAACGAAATACGGCGTCAGTGGGTGATGGC 35224 |||||||| |||||||||||| || | |||||||| || || |||||||| |||| Sbjct 3049 GAGCCTGGCTAACCGTGACCAGAATGAACTGAACGAAATCCGCCGCCAGTGGGTTCTGGC 2990 Query 35225 GTTCCGGGAAAACGGGATTACCAGCCTTGACCAGGTTTCTGCTGGTATGCGAATCGCACG 35284 ||||||||||||||||| |||| | || |||||| || || ||||| | || || Sbjct 2989 TTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAACGCAGGAATGCGCGTAGCCCG 2930 Query 35285 AAAGCAAGAGCGGCCATTCCTCCCATCGCCCGGCCAGTTCATAGCATGGTGCCGG 35339 ||| | || |||||||| ||||| ||||| ||||| | || ||||||||| Sbjct 2929 TCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTTGTCGCCTGGTGCCGG 2875 >seq2982 Length=1456 Score = 93.3 bits (102), Expect = 1e-14 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 22252 CGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATT 22302 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83 CGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137878470401508