Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq540 118 1e-21 seq322 109 6e-19 seq982 100 3e-16 seq332 87.8 2e-12 >seq540 Length=89862 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || ||||| | || | ||||| || || || ||||| ||||| |||||||| || Sbjct 84544 TTACCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCA 84485 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| || || || | ||||| || |||||||| | | || |||||||| Sbjct 84484 GAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGT 84425 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| ||||| ||||| ||||| || | ||||| || ||| Sbjct 84424 GGGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCA 84365 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || |||||||||||||| || |||||||| ||||||||||| Sbjct 84364 ACTTCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| |||| | || | || || || ||||| ||||| ||||| || || Sbjct 84085 CCACCTCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAG 84026 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || | ||||| || |||||||| | | || |||||||| || Sbjct 84025 AGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGG 83966 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCAC 134665 || |||||||| ||||| || || ||||| | | ||||| |||| || || || Sbjct 83965 ATACCTTCTTTATCTTGGATCTTGGTCTTGAC-GTTTTCAATGGTGTCAGAGCCCTCAAC 83907 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || ||||||||||| || |||||||| ||||||||||| Sbjct 83906 TTCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||||||||| ||||| || || | ||| || || || | ||| Sbjct 83833 TGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCCAATTGT 83774 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | | || || ||||| || || |||||||| ||||| ||||| Sbjct 83773 TTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGGATTTTG 83714 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | ||||| || ||| || || | || || ||||| |||||| Sbjct 83713 GTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTTTCCGGTT 83654 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || |||||||||||||| Sbjct 83653 AAAGTCTTTACAAAAATTTGCATTTT 83628 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||||| | || | || || || ||||||||||| ||||| || || Sbjct 84313 CCACCTCTGAGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAG 84254 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | ||||| || ||||| || | | || || ||||| || Sbjct 84253 AGGGTACGGCCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGG 84194 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| ||||| ||||| || | ||||| || ||| || Sbjct 84193 ATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 84134 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || ||||||||||| || || ||||| || |||||||| Sbjct 84133 TCTAATGTGATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 >seq322 Length=112280 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||| ||||| |||||||||||| | || || || || | ||| Sbjct 11435 TGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCCAATTGT 11376 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| | | || |||||||| || || |||||||| ||||| ||||| Sbjct 11375 TTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATTTTG 11316 Query 134631 TGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||| | || | | ||| |||| || ||| || || | ||||| ||||||||||| Sbjct 11315 -GTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTTTTACCGGT 11257 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||||||||| Sbjct 11256 CAAGGTCTTGACAAAAATTTGCAT 11233 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| ||||| |||| | || | || || || ||||| ||||| ||||||||||| Sbjct 12146 TTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCA 12087 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| || || || | || || || |||||||| | | || |||||||| Sbjct 12086 GAGAGGGTACGACCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGT 12027 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || ||||| || || ||||| || | ||||| || ||| Sbjct 12026 GGGATACCTTCCTTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCA 11967 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| ||||||||||| || || || || ||||||||||| Sbjct 11966 ACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || | || | || || || ||||| ||||| ||||||||||| Sbjct 11231 CCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11172 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||||| || |||||||| | | || || ||||| || Sbjct 11171 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGG 11112 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| ||||| ||||| || | || || || ||| || Sbjct 11111 ATACCTTCTTTGTCTTGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAACT 11052 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 || | ||||| ||||||||||| || || || || || ||||||||| ||| || Sbjct 11051 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATTATGTATT 10997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||| ||||| ||||||||||| | || || || || | ||| Sbjct 11891 TGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCTAATTGT 11832 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| | | || |||||||| || || |||||||| ||||| ||||| Sbjct 11831 TTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATTTTG 11772 Query 134631 TGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| | | ||||| | || || ||| || || | || || ||||||||||| Sbjct 11771 GTCTTGAC-GTTTTCAATGGTATCAGAACCTTCTACTTCCAAGGTGATTGTTTTACCGGT 11713 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || |||||||| Sbjct 11712 CAAGGTCTTTACAAAGATTTGCAT 11689 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| |||| | || | || || || ||||| ||||| ||||||||||| Sbjct 11687 CCACCTCTAAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11628 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || | ||||| || |||||||| | | || || ||||| || Sbjct 11627 AGGGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGG 11568 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || || || || || | || || || ||| || Sbjct 11567 ATACCTTCTTTGTCTTGGATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACT 11508 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| ||||||||||| || || || || || |||||||| Sbjct 11507 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 >seq982 Length=41121 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || |||||||||||||||||||||||| | || || || || | ||| Sbjct 2392 TGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAAAGTACGACCATCTTCCAATTGT 2451 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || ||||| | | || |||||||| || || |||||||| ||||| || || Sbjct 2452 TTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATCTTG 2511 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | ||||| || ||| || || | || || ||||||||||| Sbjct 2512 GTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATAGTTTTACCGGTC 2571 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||||||||| Sbjct 2572 AAGGTCTTGACAAAAATTTGCAT 2594 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| ||||| |||| | || | || || || ||||| ||||| |||||||| || Sbjct 1909 TTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCA 1968 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| || || || | ||||| || || ||||| | | || |||||||| Sbjct 1969 GAGAGGGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGT 2028 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTC 134662 || || |||||||| ||||| || || ||||| | | ||||| |||| || ||| Sbjct 2029 GGGATACCTTCTTTGTCTTGGATCTTGGTCTTGAC-GTTTTCAATGGTGTCTGAACCTTC 2087 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||||||||| || || || || ||||||||||| Sbjct 2088 TACCTCTAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| |||| | || | || || || ||||| ||||| |||||||||||| Sbjct 2596 CCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAT 2655 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||||| || || ||||| | | || ||||| || || Sbjct 2656 AAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGG 2715 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| || ||||| || | ||||| || ||| || Sbjct 2716 ATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 2775 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || | || || ||||||||||| || || || || ||||||||||| || Sbjct 2776 TCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGTT 2825 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||||||||| |||||||||||| | || || || || | ||| Sbjct 2164 TGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCCAATTGT 2223 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | | || || ||||| || || |||||||| ||||| || || Sbjct 2224 TTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTTG 2283 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | ||||| || ||| || || | || || ||||||||||| Sbjct 2284 GTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCCAAGGTGATTGTTTTACCGGTC 2343 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || || || || |||||||| Sbjct 2344 AAGGTCTTTACAAAGATTTGCAT 2366 >seq332 Length=17232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 9090 TAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCTGC 9149 |||| | || |||||||||||||||||||| ||| | | || |||| |||||||| Sbjct 6001 TAAACAACTCTATAAAACCGTTTGGGAAATTCGTCAACGTTCCCTCATCGATATGGCTGC 6060 Query 9150 GGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACC--A 9207 || ||||| || || || ||||| |||||| |||||| || ||| | || | ||| Sbjct 6061 TGAAAGAGGTGCATTCATAGATCAAAGTCAAAGTTTTAATGTTTTCATTGCTGAACCTTC 6120 Query 9208 ACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGC 9267 |||| | | | | || || |||| | | ||||||| || || ||||| || Sbjct 6121 ACTTGCTAAATTAACTTCA--ATGCATTTCTATGCCTGGAAAAAAGGATTGAAAACCGGT 6178 Query 9268 ATGTACTATTTGCGCACAAAACCCGC 9293 ||||||||| | || || | ||| || Sbjct 6179 ATGTACTATCTTCGTACTAGACCTGC 6204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505349287910480