Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq886 163 4e-35 >seq886 Length=30124 Score = 163 bits (180), Expect = 4e-35 Identities = 322/473 (68%), Gaps = 10/473 (2%) Strand=Plus/Plus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 ||||||| || || ||| ||| | ||||| ||| | || || ||||| ||| | Sbjct 23715 TCTACCAAGCTTCAACCTCTGAACTTTATGGTAAGGTTCGTGAAACTCCACAATCAGAGA 23774 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 | || || ||||||||||| || ||||||| ||| || |||| | || |||||||||| Sbjct 23775 CCACTCCATTCTACCCACGTTCACCATATGCCGTTGCCAAACAATTTGCTTATTGGATTG 23834 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG 161492 | || || | ||| |||||| ||| ||| ||| ||||| | || ||||| | Sbjct 23835 TTGTCAATTATCGTGAGGCTTATGGAATGAGTGCCTGTAACGGTATCTTGTTTAACCACG 23894 Query 161493 AGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTA 161552 | || ||| || | ||| ||||| |||||| | ||||| ||| | | | |||| Sbjct 23895 AATCTCCAAGAAGAGGTCCAACTTTTGTAACCAGAAAGATCACTCGTTTCGTTGCTCGTA 23954 Query 161553 TTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGG 161612 | |||| | || | ||| | ||||| | || | | ||| ||||||| Sbjct 23955 TCGCCCTCGGACACAAAGAAACCTTGTACTTGGGTAACATCAATGCTAAACGTGATTGGG 24014 Query 161613 GTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGA--AACTCCTGA 161670 |||| ||| ||||||| || || ||||||||| | ||||||||||| || || || || Sbjct 24015 GTCACGCTAAAGACTACGTCGAAGCTATGTGGCTCATGTTACAACAAGACCAAGTC--GA 24072 Query 161671 TGACTATGTGATTGCCACAGGTAAAGAGTATTCAGTGAAGGACTTTGT---AGAGGCATC 161727 ||||||||| |||||||| ||| || || |||| || ||||| | | |||| Sbjct 24073 TGACTATGTCATTGCCACTGGTGAAACCCATGCAGTTCGTGAATTTGTCGAAAAAGCATT 24132 Query 161728 TGCTGAATACTTTGGTATGAAGATTGAGTGGCAGGGTGAAGGATTGGATGAAG 161780 ||||||| | ||| || || | ||| |||||||| |||||||||| Sbjct 24133 TGCTGAA---ATCAATATCAACATCAAATGGAGAGGTGAAGGTTTGGATGAAG 24182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729858669091120