Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq3699 185 2e-42 seq1335 109 1e-19 >seq3699 Length=658 Score = 185 bits (204), Expect = 2e-42 Identities = 203/271 (75%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 36748 ATGAGCAGAGTAACTGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 36807 |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 36808 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA--- 36864 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 36865 GCCACA------------------TCCACAATCGCTGACATGCAGAAGCGTCAACGTGAT 36906 |||| | | |||| |||||||||||| ||| || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 36907 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 36965 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 36966 AAGCCTCCGTGCTGATGTTTCTGCTGGGCGT 36996 || |||| || |||| | ||||| ||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq1335 Length=14169 Score = 109 bits (120), Expect = 1e-19 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 20078 AATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 20137 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11409 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 11350 Query 20138 TAC 20140 ||| Sbjct 11349 TAC 11347 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 17787 ACTCCACCTTTTCATCAATCCAGTCCGCCAACCACTGCATCATTTCTCTGCGCTTAACG 17845 ||||||| |||||||||| ||| |||| | |||||||||||||||||||||||||| || Sbjct 13080 ACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCG 13022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123841366373952