Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq1979 93.3 6e-14 seq386 84.2 3e-11 >seq1979 Length=9990 Score = 93.3 bits (102), Expect = 6e-14 Identities = 177/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 198350 CGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCTTACGCATTACTCGTG 198409 ||||| | ||| | ||||||||| |||||| ||||| ||| | || || ||| Sbjct 9574 CGCAGCTCAGATGTATTCCTCGGCCTGCCGTACAACACCGCTGCCCTGGCGTTGCTCACC 9633 Query 198410 CACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATTTGGACGGGCGGTGAC 198469 || ||| | ||||||||| || || | || ||| |||| || || ||| Sbjct 9634 CATATGCTGGCCCAGCAGTGCGACCTGATCCCTCACGAGATCATCGTCACCACGGGCGAC 9693 Query 198470 ACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCAGCTGACGCGTGAGCCGTTA 198529 || || |||| || || |||| ||| | || ||||||| |||| |||| Sbjct 9694 ACCCACGCCTACAGCAACCACATGGAACAGATCCAGACCCAGCTGGCGCGCACGCCGAAG 9753 Query 198530 CCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCTATCTTCGATTATAAATTCGAA 198589 | ||| ||||| | |||||||| ||||| | || |||| |||||| ||||||||| Sbjct 9754 AAGCTGCCGGAACTGGTGATCAAGCGCAAACCCGCGTCGATCTACGATTACAAATTCGAA 9813 Query 198590 GATTTTGAGATCGTTGGGTAT 198610 |||||||| ||||| || ||| Sbjct 9814 GATTTTGAAATCGTGGGCTAT 9834 >seq386 Length=121086 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725 ||||| ||||| || ||||| || | ||| || || || ||||||||| || ||| || Sbjct 3760 GGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTG 3701 Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 ||||| || | ||||| |||||||| || || || || ||||| || Sbjct 3700 TCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAG 3641 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845 |||||||||||||| | || || || |||| | ||||| | || |||||||| || Sbjct 3640 CTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACG 3581 Query 197846 ATTTGG 197851 || ||| Sbjct 3580 ATCTGG 3575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769118853611920