Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq54 179 3e-40 seq222 143 2e-29 seq379 111 1e-19 seq1819 82.4 6e-11 >seq54 Length=99412 Score = 179 bits (198), Expect = 3e-40 Identities = 576/881 (65%), Gaps = 21/881 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | || || || || ||||||| |||||| | | || || |||||| | || Sbjct 88043 TTTGTATTATTCCCTATCGAACATCATGATATATGGAACTTTTATAAGAAAGCAGAAGCT 88102 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATT-GCATT 43818 |||||||| || || || |||| || | | ||||| | | | ||| || | Sbjct 88103 AGCTTTTGGACCGCTGAGGAGATTGACTTAAGTCAAGACCTCAAAGACTGGGCCCGCTTG 88162 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 || | | | ||| ||| ||||| ||| || ||||| || ||||| || || ||||| Sbjct 88163 AATAACG-ATGAACGACACTTTATCTCTCACGTATTGGCTTTCTTTGCAGCTAGTGACGG 88221 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || || ||||||||||| | |||| ||||| || | |||| || Sbjct 88222 TATTGTTAATGAAAATTTAGCAGAAAACTTTGTAGCTGAAGTACAGTATACAGAGGCCAA 88281 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || |||||||| || || ||||| |||| ||||| ||||| |||| || || || Sbjct 88282 ATTCTTTTATGGCTTCCAGATTGCTGTAGAGAATATCCATTCAGAAACCTATTCACTCCT 88341 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC 44058 || ||||| ||||| || ||| || || | |||| | || ||||| || || || Sbjct 88342 CATTGATACCTACATTAAGGATCCTCAAGAAAGAAATCGCCTTTTCAATGCCATCGACAC 88401 Query 44059 AGTAC-CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT 44117 | ||| | |||| | |||||||| ||||| | |||||| | ||| || | Sbjct 88402 CCTCGACTGTG-TTAAGAAAAAAGCAGAATGGGCTTTACGTTGGATAGAC-CAAGCGAGT 88459 Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCG 44176 |||| ||| |||| | || ||||||| ||| |||||||||||||| || || | | Sbjct 88460 --TTTGCTGAAAGACTCATTGCCTTTGCAGCTGTAGAAGGCATTTTCTTCTCTGGTAGCT 88517 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 ||||| | || || ||| | || ||| | || || ||||| || | | || || || Sbjct 88518 TTTGC-TCGATCTTCTGGCTCAAAAAAAGGGGATTAATGCCCGGTCTTAGCTTCTCCAAC 88576 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296 || | || | | || ||||| || ||||| || ||||||||| | ||| ||| Sbjct 88577 GAACTCATTTCTAGGGACGAAGGATTGCATTGTGACTTTGCTTGCCT----ATTGTATAC 88632 Query 44297 CTAG----GAGACGATAAGCCTTCATGTAAGACA--ATTACAGATATTGTTGTAGAGGCA 44350 | || | | || | | | || |||| | | | ||| ||| || || ||| Sbjct 88633 CAAGCACTTAAAAAATCAACTTCCA--CAAGAAAGGGTAAAAGAAATTATTACCGATGCA 88690 Query 44351 GTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT 44410 ||| || ||||| |||||| | || ||||||||||| || | || || |||||| Sbjct 88691 GTAGCAATTGAACAGGAATTTGTCACTGATGCATTACCTGTTAAGCTCATTGGCATGAAT 88750 Query 44411 GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT 44470 | |||||||| || || || || | | || ||||| ||| | | ||| | || Sbjct 88751 GCCGACTTGATGAAACAGTACATCGAGTTTGTCGCTGATCGGTTATTACTTGAATTAGGG 88810 Query 44471 TGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAA 44530 || ||| || | || || || || || |||||||| | || || | || Sbjct 88811 TGTTCTAAGGTATACAACGTGACCAATCCATTCGACTTTATGGAGATGATCTCCCTACAA 88870 Query 44531 GGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || ||||| || || |||||||||||||| || ||||| || Sbjct 88871 GGGAAAACCAATTTCTTTGAAAAACGCGTAGGTGAATACCA 88911 >seq222 Length=228455 Score = 143 bits (158), Expect = 2e-29 Identities = 211/293 (72%), Gaps = 7/293 (2%) Strand=Plus/Minus Query 43696 TAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG-CAAATGTACAAAAAAGCAC 43754 ||| ||||| | || |||||| ||||| ||| || ||| || || ||||| || || Sbjct 135750 TAGATTTGTATTATTCCCAATTAAATATAGTGATATTTGGGCATAT-TACAAGAATGCTG 135692 Query 43755 AGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG---A 43811 | || ||||||||||||||||| ||| | ||| | | || || | ||||| | Sbjct 135691 AAGCTTCATTTTGGACAGCAGAGGAAATCGATCTTGCAAATGATATCTATGATTGGGAGA 135632 Query 43812 TTGCATTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCG 43870 | |||||| | | || |||| ||||||||| ||| ||| | || || ||||| || Sbjct 135631 ATAAATTAAA-CGATAATGAAAGACATTTTATCTCTCATGTTCTAGCTTTCTTTGCAGCC 135573 Query 43871 AGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCA 43930 || ||||| || || ||||||||||| | | || | ||||||||| | ||| Sbjct 135572 AGTGACGGTATCGTTAATGAAAATTTAGCCACCAAATTCATGAGTGAAGTTCAAATTCCA 135513 Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGA 43983 ||||| || ||||| ||||| ||||||||||| || |||||||||||||| || Sbjct 135512 GAAGCTCGTTGTTTCTATGGTTTTCAAATTGCAATTGAAAATATTCATTCCGA 135460 Score = 127 bits (140), Expect = 2e-24 Identities = 178/246 (72%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 |||||||| || |||||| | || || | | || | ||||| || ||||| | | ||| Sbjct 135311 TTTAATGCTATTGAAACAATTCCATGTG-TAAAGAAGAAAGCTGATTGGGCATTGAGATG 135253 Query 44101 GAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 ||| ||||||||| ||||||| ||||| | || || ||||||| || ||||| Sbjct 135252 GATTACAAATTCAAAA---TCTTTTGCTGAACGTTTGGTAGCTTTTGCAGCCGTAGAAGG 135196 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 || |||||| || ||| | || || ||||| || || |||| |||||||| Sbjct 135195 TATATTCTTTAGTGGCAGTTTTTGTTCGATTTTCTGGTTGAAAAAGAGAGGATTGATGCC 135136 Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || ||||| ||||| ||||| | || |||||||||||||| |||||||| ||||||| Sbjct 135135 AGGATTGACTTTTTCCAATGAACTTATCAGTCGTGATGAAGGTTTACATTGTAATTTTGC 135076 Query 44278 TTGCTT 44283 || || Sbjct 135075 CTGTTT 135070 >seq379 Length=57893 Score = 111 bits (122), Expect = 1e-19 Identities = 263/395 (67%), Gaps = 18/395 (5%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| ||||| || || || |||||||||||||||||||| || ||| Sbjct 34340 CCCAAGATTGTTTCCGGTCCATCCATTTTGAACAAATATGTAGGTCAATCGGAGGAGAAT 34281 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA---ACGTTTAGGGCGCAAAAGT 19545 | || |||||| ||||||||| |||||||| |||| || | | | Sbjct 34280 ATCAGAATGTTGTTTAGAGACGCTGAAATTGAACAAAAGCAACGT----GGTGACGA--T 34227 Query 19546 TCT---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT--- 19599 ||| || || || || || | |||||| |||| || || ||||| | ||| Sbjct 34226 TCTCAATTACATATCATCATTTTTGATGAAATGGATGCTATTTGTAAATCTCGTGGTAGC 34167 Query 19600 ---TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656 ||||||| | ||| ||| ||| | ||||||||||||||| || | | | || Sbjct 34166 AGATCTGGTGATACTGGGGTAGGTGATTCGGTTGTCAATCAACTCTTGGCCATGATTGAT 34107 Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATA 19716 ||||| | |||||||||| | || ||||| ||||| || ||| ||| | || Sbjct 34106 GGTGTCGAGGCTTTGAATAATATCCTCGTCATTGGTATGACCAACAGAAAGGATATGATT 34047 Query 19717 GACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGAT 19776 || || ||| | || || ||||| |||||| || | | ||||| |||||| || Sbjct 34046 GATGAGGCTTTACTTCGTCCAGGTCGTTTGGAAGTACATGTAGAAATCTCCTTACCTAAT 33987 Query 19777 GAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 ||| || |||| |||| || || |||||||| Sbjct 33986 GAAGAAGGTCGTGAACAAATCTTCAAAATACATAC 33952 >seq1819 Length=3716 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 44345 GAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGA 44404 || || ||| | || ||| | |||||||| ||| || || || || | || || Sbjct 3675 GACGCGGTAGAAATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGG 3616 Query 44405 ATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA 44464 ||||||| | ||||| || |||||||| | ||||||| | | || |||| Sbjct 3615 ATGAATGCAAAACTGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAA 3556 Query 44465 CTGGGTTGCGATAA-ACACTATATTGTACAA--AACCCGTTTGATTTTATGGAAAATATT 44521 ||||||| ||| | | ||||| | | | || ||||||||||||||||| | || Sbjct 3555 CTGGGTT---ATACCAAAATATATCATGCCACCAATCCGTTTGATTTTATGGAGATGATC 3499 Query 44522 TCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || || |||||||||| || || ||||| ||||| || || || ||||| Sbjct 3498 TCCCTGCAAGGCAAAACCAATTTCTTTGAGAAACGTGTGGGTGATTATCA 3449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397418342782870