Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq322 111 1e-19 seq540 109 5e-19 seq982 98.7 8e-16 seq332 98.7 8e-16 >seq322 Length=112280 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || |||||||| || ||||||||| | | || | ||||| Sbjct 11441 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCC 11382 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| || |||| || | |||||||| || || | ||| ||||| || | Sbjct 11381 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 11322 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| |||| | | |||| | ||||| | |||||||||||| || |||| ||| Sbjct 11321 ATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTTTTA 11262 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || |||| || || ||||| ||||||||| || || Sbjct 11261 CCGGTCAAGGTCTTGACAAAAATTTGCATACCTCCT 11226 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | ||||| |||||||| || |||||||| | | | || ||||||| Sbjct 11669 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCTTCT 11610 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| || ||||||| | ||||| || || || | ||| ||||| || | Sbjct 11609 AATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGG 11550 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | || | || || | |||||||||||| || |||| ||| Sbjct 11549 ATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGTTTTA 11490 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || ||||||||||||||| Sbjct 11489 CCGGTCAAGGTCTTTACAAAGATTTGCATA 11460 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || |||||||| || |||||||| | | | || | ||||| Sbjct 12125 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCTTCC 12066 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || ||||| || |||| || | |||||||| || || | ||| || ||||| | Sbjct 12065 AATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGG 12006 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | |||| | ||||| | | |||||||||||| || |||| ||| Sbjct 12005 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAAGGTAATAGTTTTA 11946 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || ||||| ||||||||| Sbjct 11945 CCGGTCAAGGTCTTGACAAAAATTTGCATA 11916 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | ||| ||||| | ||||| |||||||| || |||||||| Sbjct 11231 CCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11172 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | |||||||| || |||| || | ||||| || || || Sbjct 11171 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGG 11112 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || ||| ||| | || | |||| | || || | |||||||| Sbjct 11111 ATACCTTCTTTGTCTTGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAACT 11052 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || |||| ||| || |||| || || |||||||||||||| Sbjct 11051 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11005 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||||||| | || || |||||||| || |||||||| | | || | ||||| Sbjct 11898 TACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTC 11839 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||| || ||||||| | |||||||| || || | ||| ||||| || Sbjct 11838 TAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 11779 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| | || | | |||| | || || | |||| ||||| | || || | ||| Sbjct 11778 GATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTACTTCCAAGGTGATTGTTTT 11719 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || ||||||||||||||| Sbjct 11718 ACCGGTCAAGGTCTTTACAAAGATTTGCATA 11688 >seq540 Length=89862 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || |||||||| || || || || | | | || | ||||| Sbjct 84067 ACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCC 84008 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||||||||| |||| || | |||||||| || || | ||| |||||||| | Sbjct 84007 AATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGG 83948 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | |||| | ||||| | | | |||||||||| || || | ||| Sbjct 83947 ATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAATGTGATTGTTTTA 83888 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||||| ||||| ||||||||| Sbjct 83887 CCGGTCAAGGTTTTAACAAAAATTTGCATA 83858 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || ||||| || | | | || | ||||| | ||||||||| Sbjct 84511 GTTGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCCAATTGTTTACCG 84452 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || | |||||||| || || | ||| |||||||| ||| ||| | || Sbjct 84451 GCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGTCTTG 84392 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| | |||||||||||| || || | ||| || |||| ||| Sbjct 84391 ACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATGGTTTTACCGGTCAAGGTT 84332 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||| ||||||||| Sbjct 84331 TTAACAAAAATTTGCATA 84314 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||||||| | || || || ||||| || || || || | | | || | ||||| Sbjct 83840 TACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTC 83781 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||||||||| | || || | ||||| || || || | ||| |||||||| Sbjct 83780 CAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTG 83721 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| | || | |||| | ||||| | |||||||||||| || |||| ||| Sbjct 83720 GATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTT 83661 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAATTTATTA 27266 || || | ||| || ||||| ||||||| | ||||||| ||||| Sbjct 83660 TCCGGTTAAAGTCTTTACAAAAATTTGCA----TTTTAAAAATATATTA 83616 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || ||||| || || || || | | | || | ||||| Sbjct 84295 ACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGGCCATCTTCC 84236 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||||||||| | || || | ||||| || || || | ||| |||||||| | Sbjct 84235 AATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGG 84176 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| | || | |||| | ||||| | |||||||||||| || |||| ||| Sbjct 84175 ATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTTA 84116 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || ||||||||||||||| Sbjct 84115 CCGGTCAAGGTCTTAACAAAGATTTGCATA 84086 >seq982 Length=41121 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || |||||||| || ||||||||| | | || | ||||| Sbjct 2614 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCT 2673 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||||||| |||| || | |||||||| || || | ||| ||||| || Sbjct 2674 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCTTTGTCTTGA 2733 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | |||| | ||||| | |||||||||| | || || | ||| Sbjct 2734 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATTGTTTTA 2793 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || || ||||| |||||||| Sbjct 2794 CCGGTCAAGGTCTTTACAAAAATTTGCAT 2822 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||||||| | || || || ||||| || ||||||||| | | || | ||||| Sbjct 2157 TACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTC 2216 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||||||||| | || || | ||||| || || || | ||| ||||| || Sbjct 2217 CAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 2276 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| | || | | |||| | ||||| | |||| ||||| | || || | ||| Sbjct 2277 GATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCCAAGGTGATTGTTTT 2336 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || ||||||||||||||| Sbjct 2337 ACCGGTCAAGGTCTTTACAAAGATTTGCATA 2367 >seq332 Length=17232 Score = 98.7 bits (108), Expect = 8e-16 Identities = 183/268 (68%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 131613 TGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCA 131672 ||||||| | | ||||| || | || |||||| || | |||||| | ||| | | Sbjct 5006 TGGGACAAAACAATGACCAATCGGCATTGGTTTCAACACGTTCCATAAAGAGATCGGAAA 4947 Query 131673 CCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCA 131732 |||| | || || || ||||| | ||| | ||||| | || | | ||||||| Sbjct 4946 CCCAGAGGGCATAGAAAAGATCACGAGCACGAATTTCTTCCTTTCCGTGATTCTTTTTCA 4887 Query 131733 AATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTT 131792 ||| ||||| || ||||| || |||||||| ||||||||||| || || | || |||| Sbjct 4886 AATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCCAAATAAACGGCAAAAGCACCTT 4827 Query 131793 TGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGG 131849 | | ||| || ||||||| |||| |||| | | | || | || || | ||| | Sbjct 4826 TTCTCTTGCCTCCACCTTGATCTACATAACGAGCGGTATCATTAAAGACACGAAGCATTG 4767 Query 131850 GCTCCAAACCGTTGGCGTTTCCATTGGT 131877 | |||| || |||| |||||||||| Sbjct 4766 GAACCAATCCATTGGAAGTTCCATTGGT 4739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424894139324688