Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq1335 4682 0.0 seq6381 324 5e-84 seq3699 232 2e-56 >seq1335 Length=14169 Score = 4682 bits (5192), Expect = 0.0 Identities = 2729/2816 (97%), Gaps = 1/2816 (0%) Strand=Plus/Minus Query 3719 TAATTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCCTCCTGGC 3778 || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 10184 TAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGC 10125 Query 3779 AACTTGCACAAGTCCGACAACCCTGAACGGCCAGGCGTCTTCGCTCATCTATGGGATCGC 3838 |||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 10124 AACTGGCACAAGTCCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGC 10065 Query 3839 CACACTCGCAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTG 3898 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10064 CACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTG 10005 Query 3899 CTGTGTTGCGCTGTAATTCTTCAATTTCTGATGCTGAATCAATGAGGTCTGCCATCTTTC 3958 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 10004 CTGTGTTGCGCTGTAATTCTTCAATTTCTGATGCTGAATCAATTATGTCTGCCATCTTTC 9945 Query 3959 ATTAATCCCTGAATTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAAAAAGGAG 4018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9944 ATTAATCCCTGAATTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAAAAAGGAG 9885 Query 4019 CCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCACCGTTCCTTAAAGACGCCGTTTAA 4078 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 9884 CCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCACCGTTCCTTAAAGACGCCGTTCAA 9825 Query 4079 CATGCCGATCGCCAGACTTAAATGAGTCGGTGTGAATCCCATTAGCGTTACCGTTTCGCG 4138 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 9824 CATGCCGATCGCCAGGCTTAAATGAGTCGGTGTGAATCCCATCAGCGTTACCGTTTCGCG 9765 Query 4139 GTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACTGCTGTCT 4198 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9764 GTGCTTCTTTAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACTGCTGTCT 9705 Query 4199 GGCTTTTTTGATTTCAGAATTAGCCTGACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTG 4258 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 9704 GGCTTTTTTGATTTCAGAATTAGCCTGACGGGCAATGCTGCGAAGGGCGTTTTCTTGCTG 9645 Query 4259 AGGTGTCATTGAACAAGTCCCATGTCGGCAAGCATAAGCACACAGAATATGAAGCCTGCT 4318 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 9644 AGGTGTCATTGAACAAGCCCCATGTCGGCAAGCATAAGCACACAGAATATGAAGCCCGCT 9585 Query 4319 GCCAGAAAAATGCATTCTGTTGTTGTCATGCCGGGTCTCTCTCGTTTGCTTCTGCTTTCG 4378 ||||||||||||||||| || |||||||| || |||||||||| | |||||||||||||| Sbjct 9584 GCCAGAAAAATGCATTCAGTGGTTGTCATACCTGGTCTCTCTCATCTGCTTCTGCTTTCG 9525 Query 4379 CCGCCATCATTTCCAGCTTTTGTGAAAGGGATGTGGCTAACGTATGAAATTCTTCGTCTG 4438 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 9524 CCACCATCATTTCCAGCTTTTGTGAAAGGGATGCGGCTAACGTATGAAATTCTTCGTCTG 9465 Query 4439 TTTCTACTGGTATTGGCACAAACCTGACTCCAATTTGAGCGAGGCTATGTGCCATCCCGA 4498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 9464 TTTCTACTGGTATTGGCACAAACCTGACTCCAATTTGAGCGAGGCTATGTGCCATCTCGA 9405 Query 4499 TACTCGTTCTTAATTCAACAGGAGATGCTTTGTGCATACAGCCCCTCGTTTATTATTTAT 4558 ||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||| Sbjct 9404 TACTCGTTCTTAACTCAACGGGAGATGCTTTGTGCATACAGCTCCCCGTTTATTATTTAT 9345 Query 4559 CTCTTCAGCCAGCCGCTGTGCTTTCAGTGGATTTCGGATAACAGAAAGGCCGGGAAATAC 4618 ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 9344 CTCCTCAGCCAGCCGCTGTGCTTTCAGGGGATTTCTGATAACAGAAAGGCCGGGAAATAC 9285 Query 4619 CCAGCCTCGCTTTGTAACGGAGTAGACGAAAGTGATCGTGCCTACCCGGATATTATCGTG 4678 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 9284 CCAGCCTCGCTTTGTAATGGAGTAGACGAAAGTGATCGCGCCTACCCGGATATTATCGTG 9225 Query 4679 AGGATGCTTCATTACCATTGCTCCCCATATACAAAACCAATTTCAGCCAGTGCCTCGTCC 4738 ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 9224 AGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCC 9165 Query 4739 ATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGC 4798 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 9164 ATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGC 9105 Query 4799 TCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTAC 4858 |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 9104 TCAACCACGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTAC 9045 Query 4859 CAGGCATCTTTTCGTGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTT 4918 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 9044 CAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTT 8985 Query 4919 ATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTC 4978 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 8984 ATGGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTC 8925 Query 4979 AGCTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTT 5038 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8924 AGTTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTT 8865 Query 5039 TCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAAGAGG 5098 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 8864 TCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGG 8805 Query 5099 GTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGCGTTAACTTCCGGA 5158 | |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 8804 GCTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGA 8745 Query 5159 GCCACACCGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGC 5218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8744 GCCACACCGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGC 8685 Query 5219 CACTTCTTTCCTGATCGGGGTTTTGCTATTACGTTGTGAATTTCTGAAGCTGTGATGACG 5278 |||||||||||||| ||||| |||||||| |||||||||| ||||||||| ||||||||| Sbjct 8684 CACTTCTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACG 8625 Query 5279 CCGAGCCGTAATTTGTGCCACGCATCATCTCCCTGTTCGACAGCTCTCACGTCGATCCCA 5338 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 8624 CCGAGCCGTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCG 8565 Query 5339 GTACGCTGCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGTTCAGTGGCTTTTTGTT 5398 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 8564 GTACGCTGCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTT 8505 Query 5399 TCAGGAATCCAAGAGCTTTTACTGCTTCGGCCTGTGTCAGTTCTGACGATGCACGAATGT 5458 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 8504 TCAGGAATCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGT 8445 Query 5459 CGCGGCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGG 5518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8444 CGCGGCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGG 8385 Query 5519 CGATCAGCAGAGTGTTTATTTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTT 5578 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 8384 CGATCAGCAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTT 8325 Query 5579 CCGGCTGACGTTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGT 5638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8324 CCGGCTGACGTTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGT 8265 Query 5639 CATAGATACCAGCAAATCCGAAGGCGAGACGGGCACACTGAATCATGGCTTTATGACGTA 5698 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 8264 CATAGATACCAGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTA 8205 Query 5699 ACATCCGTTTGGGATGCGACTGCCACGGCCCCGTGATTTCTCTGCCTTCGCGGGTTTTGA 5758 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 8204 ACATCCGTTTGGGATGCGACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGA 8145 Query 5759 ATGGTTCGCGGCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTACGGTCCT 5818 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 8144 ATGGTTCGCGGCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCT 8085 Query 5819 TGCGGTAAATCCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATGCCATCAAACT 5878 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 8084 TGCGGTAAATCCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACT 8025 Query 5879 GCTGGTTTTCGTTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGT 5938 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8024 GCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGT 7965 Query 5939 TCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGG 5998 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7964 TCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGG 7905 Query 5999 CGACGATCAGCAATGCGATGAACTGCGCATCGCTGGCATCACCTTTAAATGCCGTCTGGC 6058 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 7904 CGACGATCAGCAATGCGATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGC 7845 Query 6059 GAAGAGTGGTGATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCT 6118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7844 GAAGAGTGGTGATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCT 7785 Query 6119 TCCCAGCCAGCGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAAC 6178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7784 TCCCAGCCAGCGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAAC 7725 Query 6179 CTGGTGGTGAGCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGTTCCTGAAA 6238 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 7724 CTGATGGTGAGCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAA 7665 Query 6239 CTCAACATCGTCATCAAACGCACGGGTAATGGCTTTTTTGCTGGCCCCGTGGCGTTGCAA 6298 |||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || Sbjct 7664 CTCAACATCGTCATCAAATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAA 7605 Query 6299 ATGATCGATGCATAGCGATTCAAACAGGTGCTGGGGCAGGCCTTTTTCCATGTCGTCTGC 6358 |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 7604 ATGATCGATGCAGAGCGATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGC 7545 Query 6359 CAGTTCTGCCTCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGC 6418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7544 CAGTTCTGCCTCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGC 7485 Query 6419 CTCAAGACGATCCTGAATGTAATAAGCGTTCATGGCTGAACTCCTGAAAATGGCTGTGAA 6478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7484 CTCAAGACGATCCTGAATGTAATAAGCGTTCATGGCTGAACTCCTGAAAATGGCTGTGAA 7425 Query 6479 AATATCGCCCGCGAAATGCCAGGCTGATTAGGAAAACAGGAAA-TGGGGTTAGTGA 6533 |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 7424 AATATCGCCCGCGAAATGCCAGGCTGATTAGGAAAACAAGAAAGGGGGGTTAGTGA 7369 >seq6381 Length=773 Score = 324 bits (358), Expect = 5e-84 Identities = 240/279 (86%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 28271 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGTGCCGCCACAAATTTTGGCT 28330 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGCT 60 Query 28331 GCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCC 28390 ||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 61 GCATCAACAGTTTTCTCCTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCC 120 Query 28391 TTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTA 28450 ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 121 TTTGGTGTTACTGCTGTCGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTA 180 Query 28451 ATAAGCAGGGCCAGCGCAGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-T 28509 ||||||| ||||| || | || | | |||||||||||| | |||| | ||| | Sbjct 181 ATAAGCATTGCCAGAGCGGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCAT 236 Query 28510 TTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAAC 28548 | || || |||||||| |||||| | |||||||| Sbjct 237 TGTTAAAAACGGCAGAATCCTATGTGACAACAATTAAAC 275 Score = 138 bits (152), Expect = 4e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 28604 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 28663 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 404 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 462 Query 28664 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 28722 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 463 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 521 Query 28723 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 28782 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 522 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 578 Query 28783 CGG 28785 ||| Sbjct 579 CGG 581 >seq3699 Length=658 Score = 232 bits (256), Expect = 2e-56 Identities = 172/201 (86%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27771 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 27830 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 443 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 502 Query 27831 CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCG 27890 ||| | | |||||| || | ||||||||||||||| |||||||||||||||||||||| Sbjct 503 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 562 Query 27891 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 27950 || |||| ||||||| ||| ||||||||| |||||| |||||||||||| |||||||| Sbjct 563 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 622 Query 27951 GCTGATGTTGCCGCTGGTCGT 27971 | || |||||||||||||||| Sbjct 623 GATGGTGTTGCCGCTGGTCGT 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184427772747732