Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq1500 114 3e-21 seq7157 104 6e-18 seq3563 98.7 3e-16 >seq1500 Length=48209 Score = 114 bits (126), Expect = 3e-21 Identities = 135/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCA-- 41256 ||||| ||||| ||| |||||||||| || | ||| ||||| || || || || ||| Sbjct 46839 GGCAATGATCCGGAAGTCCGTTACATCCCCAACGGGGGCGCAGTGGCAAACCT--GCAGG 46782 Query 41257 TCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAAT 41316 | |||||| | ||||||||| || ||| || || |||| | || || ||||||| Sbjct 46781 TGGCCACATCAGAAAGCTGGCGTGACAAACAGACGGGGGAGATGCGGGAGCAGACGGAAT 46722 Query 41317 GGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAG 41376 |||||||||| || | ||||| ||||| || ||| | ||| | ||||| |||||||| | Sbjct 46721 GGCACCGCGTGGTGCTGTTCGGCAAGCTCGCGGAAGTGGCTGGTGAATATCTGCGCAAGG 46662 Query 41377 G 41377 | Sbjct 46661 G 46661 >seq7157 Length=721 Score = 104 bits (114), Expect = 6e-18 Identities = 196/288 (68%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 41172 AACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGC 41231 |||||||| || | |||||| ||| ||| || ||| |||| |||| || | | Sbjct 381 AACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCCGAAC 322 Query 41232 GGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACC 41291 ||| ||| || | || ||| | | ||||| | ||||||||||| ||||| ||| Sbjct 321 GGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCAGACC 262 Query 41292 GGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAA 41351 ||| || || | || | || || ||||||||||| || ||||||| ||| | || ||| Sbjct 261 GGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGCCGAA 202 Query 41352 ATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACG 41411 || || | || || ||||| ||||| ||| || | | | ||||||| || || || Sbjct 201 ATCGCGGGTGAGTATCTGCGAAAAGGGAGCCAGTGCTACGTCGAAGGCACTCTCCGCACC 142 Query 41412 CGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATC 41459 || | || ||| | | || || | ||||||||||| || ||| Sbjct 141 CGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATC 97 >seq3563 Length=1830 Score = 98.7 bits (108), Expect = 3e-16 Identities = 181/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATC 41258 ||| | ||||| ||| | || ||| |||| | ||| ||| || | || || || | Sbjct 1125 GGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAACGCCGTGACCAACCTGAGTCTG 1184 Query 41259 GCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGG 41318 || || | ||| |||| || || |||||| ||||| || |||| |||||| Sbjct 1185 GCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAATGG 1244 Query 41319 CACCGCGTTGTC-ATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGG 41377 ||||| | |||| || ||||| ||| | ||||| || || | ||||||||||||||||| Sbjct 1245 CACCGTG-TGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGG 1303 Query 41378 TAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGT 41437 | |||| | ||| ||||||| |||| ||| || | || ||| | | ||| | Sbjct 1304 TTCGCAGGTCTACATCGAAGGCAAGCTGCAAACCCGCGAGTG---GGAAAAAGACGGCAT 1360 Query 41438 TGATCGCTACACCACTGAAATC 41459 | || ||||||||||||||| Sbjct 1361 CAAGCGTTACACCACTGAAATC 1382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133197302589264