Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3596 136 4e-27 seq54 122 1e-22 >seq3596 Length=2072 Score = 136 bits (150), Expect = 4e-27 Identities = 343/517 (66%), Gaps = 7/517 (1%) Strand=Plus/Minus Query 59616 TTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAAT 59675 |||||| ||| || || |||||||| | | |||| |||| | |||||||| || || Sbjct 551 TTCTGGACCGCTGAAGAAATTGACCTTTCTGATGACCAGAAGCACTGGGACAA-CTTAAA 493 Query 59676 TAC-GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAAT 59734 ||| | ||||| |||||||| | || || || || || || ||||| || || Sbjct 492 TACAGGCGAGCGTCATTTCATTTCTCATATACTTGCTTTTTTTGCTGCAAGTGACGGCAT 433 Query 59735 TGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTC 59794 ||| | ||||| | | ||||||| | || || ||| || |||| ||||| | Sbjct 432 TGTAAATGAAAACCTTGCAGTGAACTTCATGAGCGAAGTACAGCTTCCCGAAGCCCGTTG 373 Query 59795 GTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 || || | | ||| | | || |||||||| || || || |||| |||| Sbjct 372 TTTTTATGGCTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTATGCGCTGCTGAT 313 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||||| | | || ||||| ||||| || | | ||||||| |||| |||||||| Sbjct 312 CGATACCTATATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCCGTAGAGACGGT 253 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA-TGAGTCCTGGAGCATCAT 59973 || || || |||||||||||||||| ||| |||| |||| || | | | Sbjct 252 TCCTTGTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAG----GGCGGAAATT 197 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 |||| ||||| | | ||||| || |||||||| || |||||| || |||| Sbjct 196 TTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCT 137 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 || | || |||||| | ||||| | ||||| ||||| || || | || || ||| Sbjct 136 GTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGAGT 77 Query 60094 TGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 |||||||| | || ||||| | ||| || ||||| Sbjct 76 TGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGC 40 >seq54 Length=99412 Score = 122 bits (134), Expect = 1e-22 Identities = 352/537 (66%), Gaps = 5/537 (1%) Strand=Plus/Plus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 ||||||||||| | | || ||| ||| |||||||||||| | |||||| Sbjct 88085 TATAAGAAAGCAGAAGCTAGCTTTTGGACCGCTGAGGAGATTGACTTAAGTCAAGACCTC 88144 Query 59655 AAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTC 59714 || || |||| | | ||| |||| || | || || ||| || |||| ||| Sbjct 88145 AAAGACTGGGCCCGCTTGAATAACGATGAACGACACTTTATCTCTCACGTATTGGCTTTC 88204 Query 59715 TTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTC 59774 || || || ||||| || ||||| | |||||| ||| |||||| || || Sbjct 88205 TTTGCAGCTAGTGACGGTATTGTTAATGAAAATTTAGCAGAAAACTTTGTAGCTGAAGTA 88264 Query 59775 CAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTC 59833 ||| | | |||||| | || || | | ||| | | | | ||| |||||| || Sbjct 88265 CAGTATACAGAGGCCAAATTCTTTTATGGCTTCCAGATTGCTGTA-GAGAATATCCATTC 88323 Query 59834 CGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCT 59893 || || || || ||| | || |||| | | |||||||| |||| | | | || Sbjct 88324 AGAAACCTATTCACTCCTCATTGATACCTACATTAAGGATCCTCAAGAAAGAAATCGCCT 88383 Query 59894 GTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTG 59953 ||| |||||| || || | | ||||| |||||||||||||||| | | || Sbjct 88384 TTTCAATGCCATCGACACCCTCGACTGTGTTAAGAAAAAAGCAGAATGGGCTTTACGTTG 88443 Query 59954 GATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAAT 60013 ||| || || | | | ||||| || | ||||| || |||||| || ||||| || Sbjct 88444 GAT-AGACCAAGCGAGT--TTTGCTGAAAGACTCATTGCCTTTGCAGCTGTAGAAGGCAT 88500 Query 60014 CTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGG 60073 ||||||||||| || || | || |||||||||||||| | || | ||||| || Sbjct 88501 TTTCTTCTCTGGTAGCTTTTGCTCGATCTTCTGGCTCAAAAAAAGGGGATTAATGCCCGG 88560 Query 60074 CCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 || || ||||||||||| || ||||| ||||||| || | ||| || ||||| Sbjct 88561 TCTTAGCTTCTCCAACGAACTCATTTCTAGGGACGAAGGATTGCATTGTGACTTTGC 88617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548471497102560