Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq1571 2114 0.0 seq1335 664 0.0 seq6381 324 6e-84 seq915 269 1e-67 seq3699 203 1e-47 >seq1571 Length=18444 Score = 2114 bits (2344), Expect = 0.0 Identities = 1255/1310 (96%), Gaps = 0/1310 (0%) Strand=Plus/Plus Query 2456 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 2515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13841 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 13900 Query 2516 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 2575 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 13901 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAAGAGTATGGCCCAGCCT 13960 Query 2576 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 2635 | ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 13961 TTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCTACTTC 14020 Query 2636 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 2695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14021 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 14080 Query 2696 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGC 2755 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 14081 CTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGC 14140 Query 2756 TTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATG 2815 ||| || || |||| || |||||||| || ||||||||||| |||||||| |||||||| Sbjct 14141 TTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATG 14200 Query 2816 GATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 2875 || ||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 14201 GACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGT 14260 Query 2876 CGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14261 CGTTTCCATGGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 14320 Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14321 GAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 14380 Query 2996 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 3055 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14381 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 14440 Query 3056 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGC 3115 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 14441 CCGGCTGATGGTCGTACGGACCTTTTTACCCCAGAGAACACCGGCAAGTCCCATAACCGC 14500 Query 3116 CATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCA 3175 ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 14501 CATGAGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCA 14560 Query 3176 GACTTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTT 3235 |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| Sbjct 14561 GACTTTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTCTTTCTT 14620 Query 3236 CAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 3295 |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14621 CAGCCAGTTATCGCGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 14680 Query 3296 ACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTA 3355 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 14681 ACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTA 14740 Query 3356 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 3415 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 14741 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCACC 14800 Query 3416 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTT 3475 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 14801 TTCGCAAAATAAGCGGAAGCCTGGCGAAGAATATCGTTACTGCGGCGCAGTTCACGATTT 14860 Query 3476 TCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCC 3535 ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 14861 TCACGCTCCAGCTCTTTCAGACGCTGACGTTCAGCGGTGGTGAGCCCTCCATCACCGCCC 14920 Query 3536 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 3595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14921 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 14980 Query 3596 TTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGA 3655 ||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct 14981 TTTGGAGCAATGGAACAAATTGTCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGA 15040 Query 3656 ACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 3715 |||||||| | || || |||||||||||||||||||||||||||||||||||||||||| Sbjct 15041 ACCATACGGACTGCTCGTTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 15100 Query 3716 TTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 3765 ||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 15101 TTTACCTCTTTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCA 15150 >seq1335 Length=14169 Score = 664 bits (736), Expect = 0.0 Identities = 555/677 (82%), Gaps = 2/677 (0%) Strand=Plus/Minus Query 14107 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14166 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 9210 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 9151 Query 14167 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGACATA 14226 ||||||||||||||| |||||||||| |||||| || |||||||| || ||||||||||| Sbjct 9150 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 9091 Query 14227 ATGCAGGCCTTCACGCTTCATGCGTGGATCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 14286 ||||||||||||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 9090 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 9031 Query 14287 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 14346 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 9030 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 8971 Query 14347 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTGAAGGGGCATTTAAGCTCAAGGCCGTT 14406 || |||||||| |||||||| || ||||| || || |||||||| || ||||||||||| Sbjct 8970 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 8911 Query 14407 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 14466 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| | || Sbjct 8910 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 8851 Query 14467 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAACTCGAAGAGGGCACGGGCATCATC 14526 || || | ||| | || | || | | ||||||| || ||||| | ||| || | Sbjct 8850 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 8791 Query 14527 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 14586 ||||| || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 8790 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 8731 Query 14587 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 14646 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 8730 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 8671 Query 14647 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 14706 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 8670 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 8611 Query 14707 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 14765 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 8610 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 8552 Query 14766 TAATTTCTGGTGTCATG 14782 |||| || ||||||||| Sbjct 8551 TAATGTCCGGTGTCATG 8535 >seq6381 Length=773 Score = 324 bits (358), Expect = 6e-84 Identities = 240/279 (86%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 34123 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGTGCCGCCACAAATTTTGGCT 34182 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGCT 60 Query 34183 GCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCC 34242 ||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 61 GCATCAACAGTTTTCTCCTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCC 120 Query 34243 TTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTA 34302 ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 121 TTTGGTGTTACTGCTGTCGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTA 180 Query 34303 ATAAGCAGGGCCAGCGCAGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-T 34361 ||||||| ||||| || | || | | |||||||||||| | |||| | ||| | Sbjct 181 ATAAGCATTGCCAGAGCGGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCAT 236 Query 34362 TTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAAC 34400 | || || |||||||| |||||| | |||||||| Sbjct 237 TGTTAAAAACGGCAGAATCCTATGTGACAACAATTAAAC 275 Score = 138 bits (152), Expect = 5e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 34456 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 34515 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 404 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 462 Query 34516 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 34574 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 463 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 521 Query 34575 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 34634 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 522 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 578 Query 34635 CGG 34637 ||| Sbjct 579 CGG 581 >seq915 Length=38681 Score = 269 bits (298), Expect = 1e-67 Identities = 279/365 (76%), Gaps = 3/365 (1%) Strand=Plus/Plus Query 3785 GCGTTAATGCGTTCAGGCAGATTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCG 3844 |||| ||||| | ||||| || || ||| ||||| || |||||||||||||| || Sbjct 1771 GCGTCCATGCGCGCCGGCAGTTTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCC 1830 Query 3845 CGAGTGGTGCTACCCATACCCATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTC 3904 || || || ||||| || ||| | ||| | | || | ||| ||||| | Sbjct 1831 CGGGTCATGTGTCCCATGCCGATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGC 1887 Query 3905 CAGGTTAATCCTTTCATCGTCACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCT 3964 ||||| ||||| |||||||||| ||| ||||| ||||||||||| | ||||||||| ||| Sbjct 1888 CAGGTGAATCCCTTCATCGTCATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCT 1947 Query 3965 TCAAGTGGTTGTGTAGGCACCCACCACATAGCCAACAGGCAATTATCGGCTGCCAGTTCC 4024 |||| || ||||| || |||||||||||||||| |||||||| ||||| ||||| ||| Sbjct 1948 TCAATCGGCTGTGTTGGAACCCACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCC 2007 Query 4025 CATACCGGGAGGCGGCAGATATCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCG 4084 || || || ||||||||||| ||||| | |||| |||||||| || || | || ||| Sbjct 2008 CACACAGGCAGGCGGCAGATGTCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCG 2067 Query 4085 CGTTGACCATCGGTTGCTTTGTCTCGGAATGTCCAGGGGGGATCTGCGTAAATGAGAGTG 4144 || | || |||| ||||||||| ||| || ||| || || |||||||||||||||||| Sbjct 2068 CGCTCGCCGTCGGCTGCTTTGTCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTG 2127 Query 4145 TATTT 4149 ||||| Sbjct 2128 TATTT 2132 Score = 105 bits (116), Expect = 3e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 2314 CGCATTGGTTACCCCAGACATCAAATCCATGCGAGGTGTGACGGGCGAACAGTTCTATCC 2373 |||| ||||| ||||| || ||||| |||||||| | || |||||||| || || || | Sbjct 1613 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 1672 Query 2374 GGGGAACATCGCCAAGAAGTTGCACAAGTTTTTCTCGCGCCATATCCGGCTTGCGGGAGT 2433 | || ||||||||||| | ||||| || || |||| || ||||||||||| |||| Sbjct 1673 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 1732 Query 2434 GATCAAGGCGCGGTGCAGTGA 2454 || |||||||| || |||| Sbjct 1733 TCTCCAGGCGCGGCGCCGTGA 1753 >seq3699 Length=658 Score = 203 bits (224), Expect = 1e-47 Identities = 169/206 (82%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33617 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 33674 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 435 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 494 Query 33675 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 33734 ||| || ||| ||||||| || || | |||||||| |||||| |||||||||||||| Sbjct 495 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATG 554 Query 33735 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 33794 |||||||||| |||| | |||| ||| ||| ||||| |||||| |||||||||||| Sbjct 555 TTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATG 614 Query 33795 CTCTTCGCGCTGACGTTGCCGCTGGT 33820 |||| || | || |||||||||||| Sbjct 615 CTCTGCGTGATGGTGTTGCCGCTGGT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203276738593420