Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq540 116 2e-21 seq982 107 1e-18 seq322 102 5e-17 >seq540 Length=89862 Score = 116 bits (128), Expect = 2e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||| || |||||||| ||||||||||| || || || || | ||||| Sbjct 83839 ACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCC 83780 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||||||||| |||| | |||||||| || || | || || || ||| | Sbjct 83779 AATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGG 83720 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| || || || | ||| ||||| | || ||||| | || || ||||| Sbjct 83719 AT-TTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTT 83661 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||||||| || || |||||||| ||||| || Sbjct 83660 TCCGGTTAAAGTCTTTACAAAAATTTGCATTTT 83628 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || ||||| || || || ||||| ||||||||||| || Sbjct 84085 CCACCTCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAG 84026 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||||||||||||| || | | ||||| || || || Sbjct 84025 AGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGG 83966 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| |||| || || || ||| | ||| ||||| || ||| || Sbjct 83965 ATACCTTCTTTATCTTGGATC-TTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAAC 83907 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 83906 TTCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | || ||||||||||| |||||||| ||||||||||| || Sbjct 84313 CCACCTCTGAGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAG 84254 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||||||||||||| || | | |||||||| || || Sbjct 84253 AGGGTACGGCCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGG 84194 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||| || || || | ||| ||||| | || || Sbjct 84193 ATACCTTCTTTATCTTGGAT-TTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAAC 84135 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||||||||| || || || ||||| || ||||| Sbjct 84134 TTCTAATGTGATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || || ||||| ||||| ||||| || || || || | ||||| | ||| Sbjct 84518 ATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCCAATTG 84459 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 |||||||||||| || | | ||||| || || || | || || || ||| ||| || Sbjct 84458 TTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGAT-TT 84400 Query 34623 TTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | || || || | ||| ||||| | || ||||| | || || |||||||||| Sbjct 84399 TGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATGGTTTTACCGG 84340 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| |||||||| ||||| Sbjct 84339 TCAAGGTTTTAACAAAAATTTGCAT 84315 >seq982 Length=41121 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || ||||||||||| || ||||| ||||| ||||| || Sbjct 1912 CCACCTCTAAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAG 1971 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||||||| || || || | | ||||| || || || Sbjct 1972 AGGGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGG 2031 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||| || || || ||| | ||| |||||| | || || Sbjct 2032 ATACCTTCTTTGTCTTGGATC-TTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTAC 2090 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || ||||||||||| || || || |||||||| ||||| Sbjct 2091 CTCTAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||| || |||||||| ||||| || || || | || || | ||||| Sbjct 2158 ACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCC 2217 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||||||||| || | | |||||||| || || | || || |||||| | Sbjct 2218 AATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGG 2277 Query 34618 ATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || || || ||| | || ||||| | || ||||||| ||| || ||||| Sbjct 2278 ATC-TTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCCAAGGTGATTGTTTT 2336 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || ||||| || ||||| Sbjct 2337 ACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 Score = 104 bits (114), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || ||||||||||| || ||||| ||||| || || || Sbjct 2596 CCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAT 2655 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||||||| || || | | ||||| || || || Sbjct 2656 AAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGG 2715 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| || || || || | ||| ||||| | || || Sbjct 2716 ATACCTTCTTTGTCT-TGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAAC 2774 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||||| ||| || ||||||||||| || || || |||||||| |||||||| Sbjct 2775 TTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGTT 2825 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||| || |||||||||||||| || || || | || || | ||||| Sbjct 2386 ACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAAAGTACGACCATCTTCC 2445 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| || || || | | ||||| || || || | || || |||||| | Sbjct 2446 AATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 2505 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || || || || | ||| ||||| | || ||||||| ||| || ||||| Sbjct 2506 ATC-TTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATAGTTTT 2564 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || |||||||| ||||| Sbjct 2565 ACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 >seq322 Length=112280 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||||||||| || ||||| ||||| || || || | || || | ||||| Sbjct 11441 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCC 11382 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| ||||| || | | ||||| || || || | || || |||||| | Sbjct 11381 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 11322 Query 34618 ATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| ||||||||| | || ||||| | || ||||| | ||| || ||||| Sbjct 11321 AT-TTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTTTT 11263 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || |||||||| ||||| Sbjct 11262 ACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || ||||||||||| || ||||| ||||| || || || Sbjct 11687 CCACCTCTAAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11628 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||||||||| ||||| || | | |||||||| || || Sbjct 11627 AGGGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGG 11568 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||| || || || || | ||| || || | || || Sbjct 11567 ATACCTTCTTTGTCTTGGATC-TTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAAC 11509 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||||||||| || || || ||||| || ||||| Sbjct 11508 TTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || ||||||||||| || ||||| ||||| || || || Sbjct 12143 CCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAG 12084 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| ||||| ||||| || | | ||||| || || || Sbjct 12083 AGGGTACGACCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGG 12024 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| |||| || || || || | ||| ||||| || || || Sbjct 12023 ATACCTTCCTTATCTTGGATC-TTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAAC 11965 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||||||||| || || || |||||||| ||||| Sbjct 11964 TTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||| || || ||||| ||||| || || || || || || | ||||| Sbjct 11897 ACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCT 11838 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| ||||| || | | ||||| || || || | || || |||||| | Sbjct 11837 AATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 11778 Query 34618 ATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| || || ||| | ||| || || | || ||||||| ||| || ||||| Sbjct 11777 AT-TTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTACTTCCAAGGTGATTGTTTT 11719 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || ||||| || ||||| Sbjct 11718 ACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || ||||| || || || ||||| ||||| || || || Sbjct 11231 CCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11172 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||||||| ||||| || | | |||||||| || || Sbjct 11171 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGG 11112 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| || || || | ||| || || | || || Sbjct 11111 ATACCTTCTTTGTCTTGGAT-TTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAAC 11053 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||||||||| || || || ||||| || ||||| Sbjct 11052 TTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314699780747342