Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq1571 2114 0.0 seq1335 664 0.0 seq915 360 8e-95 seq6381 324 6e-84 seq3699 203 1e-47 >seq1571 Length=18444 Score = 2114 bits (2344), Expect = 0.0 Identities = 1255/1310 (96%), Gaps = 0/1310 (0%) Strand=Plus/Plus Query 32904 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 32963 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13841 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 13900 Query 32964 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 33023 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 13901 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAAGAGTATGGCCCAGCCT 13960 Query 33024 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 33083 | ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 13961 TTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCTACTTC 14020 Query 33084 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 33143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14021 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 14080 Query 33144 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGC 33203 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 14081 CTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGC 14140 Query 33204 TTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATG 33263 ||| || || |||| || |||||||| || ||||||||||| |||||||| |||||||| Sbjct 14141 TTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATG 14200 Query 33264 GATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 33323 || ||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 14201 GACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGT 14260 Query 33324 CGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 33383 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14261 CGTTTCCATGGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 14320 Query 33384 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 33443 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14321 GAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 14380 Query 33444 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 33503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14381 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 14440 Query 33504 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGC 33563 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 14441 CCGGCTGATGGTCGTACGGACCTTTTTACCCCAGAGAACACCGGCAAGTCCCATAACCGC 14500 Query 33564 CATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCA 33623 ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 14501 CATGAGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCA 14560 Query 33624 GACTTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTT 33683 |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| Sbjct 14561 GACTTTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTCTTTCTT 14620 Query 33684 CAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 33743 |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14621 CAGCCAGTTATCGCGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 14680 Query 33744 ACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTA 33803 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 14681 ACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTA 14740 Query 33804 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 33863 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 14741 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCACC 14800 Query 33864 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTT 33923 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 14801 TTCGCAAAATAAGCGGAAGCCTGGCGAAGAATATCGTTACTGCGGCGCAGTTCACGATTT 14860 Query 33924 TCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCC 33983 ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 14861 TCACGCTCCAGCTCTTTCAGACGCTGACGTTCAGCGGTGGTGAGCCCTCCATCACCGCCC 14920 Query 33984 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 34043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14921 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 14980 Query 34044 TTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGA 34103 ||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct 14981 TTTGGAGCAATGGAACAAATTGTCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGA 15040 Query 34104 ACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 34163 |||||||| | || || |||||||||||||||||||||||||||||||||||||||||| Sbjct 15041 ACCATACGGACTGCTCGTTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 15100 Query 34164 TTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 34213 ||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 15101 TTTACCTCTTTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCA 15150 >seq1335 Length=14169 Score = 664 bits (736), Expect = 0.0 Identities = 555/677 (82%), Gaps = 2/677 (0%) Strand=Plus/Minus Query 14164 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14223 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 9210 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 9151 Query 14224 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGACATA 14283 ||||||||||||||| |||||||||| |||||| || |||||||| || ||||||||||| Sbjct 9150 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 9091 Query 14284 ATGCAGGCCTTCACGCTTCATGCGTGGATCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 14343 ||||||||||||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 9090 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 9031 Query 14344 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 14403 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 9030 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 8971 Query 14404 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTGAAGGGGCATTTAAGCTCAAGGCCGTT 14463 || |||||||| |||||||| || ||||| || || |||||||| || ||||||||||| Sbjct 8970 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 8911 Query 14464 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 14523 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| | || Sbjct 8910 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 8851 Query 14524 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAACTCGAAGAGGGCACGGGCATCATC 14583 || || | ||| | || | || | | ||||||| || ||||| | ||| || | Sbjct 8850 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 8791 Query 14584 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 14643 ||||| || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 8790 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 8731 Query 14644 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 14703 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 8730 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 8671 Query 14704 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 14763 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 8670 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 8611 Query 14764 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 14822 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 8610 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 8552 Query 14823 TAATTTCTGGTGTCATG 14839 |||| || ||||||||| Sbjct 8551 TAATGTCCGGTGTCATG 8535 Score = 123 bits (136), Expect = 1e-23 Identities = 77/83 (93%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 2 TACTCCACCTTCCCATCAAGCCAGTCCGCCCACCACTGCATCATTTCTCTGCGCTTATCG 61 |||||||| || |||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 13081 TACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCG 13022 Query 62 AGATACTGAGCATGGTTGTAAAT 84 ||||||||||| ||||||||||| Sbjct 13021 AGATACTGAGCGTGGTTGTAAAT 12999 >seq915 Length=38681 Score = 360 bits (398), Expect = 8e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 3684 CGCATTGGTTACCCCAGACATCAAATCCATGCGAGGTGTGACGGGCGAACAGTTCTATCC 3743 |||| ||||| ||||| || ||||| |||||||| | || |||||||| || || || | Sbjct 1613 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 1672 Query 3744 GGGGAACATCGCCAAGAAGTTGCACAAGTTTTTCTCGCGCCATATCCGGCTTGCGGGAGT 3803 | || ||||||||||| | ||||| || || |||| || ||||||||||| |||| Sbjct 1673 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 1732 Query 3804 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCAGGCAGA 3862 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 1733 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 1791 Query 3863 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3922 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 1792 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 1851 Query 3923 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3982 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 1852 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 1908 Query 3983 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 4042 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 1909 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 1968 Query 4043 CACCACATAGCCAACAGGCAATTATCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 4102 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 1969 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 2028 Query 4103 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 4162 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 2029 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 2088 Query 4163 TCTCGGAATGTCCAGGGGGGATCTGCGTAAATGAGAGTGTATTT 4206 || ||| || ||| || || ||||||||||||||||||||||| Sbjct 2089 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 2132 >seq6381 Length=773 Score = 324 bits (358), Expect = 6e-84 Identities = 240/279 (86%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 35502 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGTGCCGCCACAAATTTTGGCT 35561 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGCT 60 Query 35562 GCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCC 35621 ||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 61 GCATCAACAGTTTTCTCCTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCC 120 Query 35622 TTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTA 35681 ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 121 TTTGGTGTTACTGCTGTCGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTA 180 Query 35682 ATAAGCAGGGCCAGCGCAGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-T 35740 ||||||| ||||| || | || | | |||||||||||| | |||| | ||| | Sbjct 181 ATAAGCATTGCCAGAGCGGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCAT 236 Query 35741 TTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAAC 35779 | || || |||||||| |||||| | |||||||| Sbjct 237 TGTTAAAAACGGCAGAATCCTATGTGACAACAATTAAAC 275 Score = 138 bits (152), Expect = 5e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 35835 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 35894 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 404 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 462 Query 35895 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 35953 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 463 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 521 Query 35954 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 36013 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 522 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 578 Query 36014 CGG 36016 ||| Sbjct 579 CGG 581 >seq3699 Length=658 Score = 203 bits (224), Expect = 1e-47 Identities = 169/206 (82%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 34996 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 35053 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 435 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 494 Query 35054 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 35113 ||| || ||| ||||||| || || | |||||||| |||||| |||||||||||||| Sbjct 495 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATG 554 Query 35114 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 35173 |||||||||| |||| | |||| ||| ||| ||||| |||||| |||||||||||| Sbjct 555 TTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATG 614 Query 35174 CTCTTCGCGCTGACGTTGCCGCTGGT 35199 |||| || | || |||||||||||| Sbjct 615 CTCTGCGTGATGGTGTTGCCGCTGGT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210911215191624